Education
Ph.D. in Graduate Institute of Agricultural Biotechnology, National Chung-Hsing University, Taiwan, 2001
Current position
Associate Professor in Institute of Biotechnology, National Taiwan University
Publication (since 2005)
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Lin, P. C., Lu, C. W., Shen, B. N., Lee, G. Z., Bowman, J. L., Arteaga-Vazquez, M. A., Liu, L. Y., Hong, S. F., Lo, C. F., Su, G. M., Kohchi, T., Ishizaki, K., Zachgo, S., Althoff, F., Takenaka, M., Yamato, K. T. and Lin, S. S.* (2016). Identification of miRNAs and Their Targets in the Liverwort Marchantia polymorpha by Integrating RNA-Seq and Degradome Analyses. Plant Cell Physiol 57(2): 339-358. (*Correspond author)
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Bowman, J. L., Araki, T., Arteaga-Vazquez, M. A., Berger, F., Dolan, L., Haseloff, J., Ishizaki, K., Kyozuka, J., Lin, S. S., Nagasaki, H., Nakagami, H., Nakajima, K., Nakamura, Y., Ohashi-Ito, K., Sawa, S., Shimamura, M., Solano, R., Tsukaya, H., Ueda, T., Watanabe, Y., Yamato, K. T., Zachgo, S. and Kohchi, T. (2016). The Naming of Names: Guidelines for Gene Nomenclature in Marchantia. Plant Cell Physiol 57(2): 257-261.
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Chen, K. I., Pan, C. Y., Li, K. H., Huang, Y. C., Lu, C. W., Tang, C. Y., Su, Y. W., Tseng, L. W., Tseng, K. C., Lin, C. Y., Chen, C. D., Lin, S. S.* and Chen, Y. T.* (2015). Isolation and Identification of Post-Transcriptional Gene Silencing-Related Micro-RNAs by Functionalized Silicon Nanowire Field-effect Transistor. Sci Rep 5: 17375. (*Co-correspond author)
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Liu, C. T., Huang, H. M., Hong, S. F., Kuo-Huang, L. L., Yang, C. Y., Lin, Y. Y., Lin, C. P.* and Lin, S. S.* (2015). Peanut witches' broom (PnWB) phytoplasma-mediated leafy flower symptoms and abnormal vascular bundles development. Plant Signal Behav 10(12): e1107690. (*Co-correspond author)
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Lee, C. T., Chen, I. T., Yang, Y. T., Ko, T. P., Huang, Y. T., Huang, J. Y., Huang, M. F., Lin, S. J., Chen, C. Y., Lin, S. S., Lightner, D. V., Wang, H. C., Wang, A. H., Wang, H. C., Hor, L. I. and Lo, C. F. (2015). The opportunistic marine pathogen Vibrio parahaemolyticus becomes virulent by acquiring a plasmid that expresses a deadly toxin. Proc Natl Acad Sci U S A 112(34): 10798-10803.
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Liao, H. F., Mo, C. F., Wu, S. C., Cheng, D. H., Yu, C. Y., Chang, K. W., Kao, T. H., Lu, C. W., Pinskaya, M., Morillon, A., Lin, S. S., Cheng, W. T., Bourc'his, D., Bestor, T., Sung, L. Y. and Lin, S. P. (2015). Dnmt3l-knockout donor cells improve somatic cell nuclear transfer reprogramming efficiency. Reproduction 150(4): 245-256.
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Yang, C. Y., Huang, Y. H., Lin, C. P., Lin, Y. Y., Hsu, H. C., Wang, C. N., Liu, L. Y., Shen, B. N. and Lin, S. S.* (2015). MicroRNA396-Targeted SHORT VEGETATIVE PHASE Is Required to Repress Flowering and Is Related to the Development of Abnormal Flower Symptoms by the Phyllody Symptoms1 Effector. Plant Physiol 168(4): 1702-1716. (*Correspond author)
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Hu, S. F., Huang, Y. H., Lin, C. P., Liu, L. Y., Hong, S. F., Yang, C. Y., Lo, H. F., Tseng, T. Y., Chen, W. Y. and Lin, S. S.* (2015). Development of a Mild Viral Expression System for Gain-Of-Function Study of Phytoplasma Effector In Planta. PLoS One 10(6): e0130139. (*Correspond author)
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Huang, C. H., Hsiao, W. R., Huang, C. W., Chen, K. C., Lin, S. S., Chen, T. C., Raja, J. A., Wu, H. W. and Yeh, S. D. (2015). Two Novel Motifs of Watermelon Silver Mottle Virus NSs Protein Are Responsible for RNA Silencing Suppression and Pathogenicity. PLoS One 10(5): e0126161.
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Lin, Y. L., Ma, L. T., Lee, Y. R., Lin, S. S., Wang, S. Y., Chang, T. T., Shaw, J. F., Li, W. H. and Chu, F. H. (2015). MicroRNA-like small RNAs prediction in the development of Antrodia cinnamomea. PLoS One 10(4): e0123245.
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Lin, P. C., Hu, W. C., Lee, S. C., Chen, Y. L., Lee, C. Y., Chen, Y. R., Liu, L. Y., Chen, P. Y., Lin, S. S.* and Chang, Y. C.* (2015). Application of an Integrated Omics Approach for Identifying Host Proteins That Interact With Odontoglossum ringspot virus Capsid Protein. Mol Plant Microbe Interact 28(6): 711-726. (*Co-correspond author)
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Wen, C. H., Lin, S. S. and Chu, F. H. (2015). Transcriptome analysis of a subtropical deciduous tree: autumn leaf senescence gene expression profile of formosan gum. Plant Cell Physiol 56(1): 163-174.
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Yang, Y. T., Chen, I. T., Lee, C. T., Chen, C. Y., Lin, S. S., Hor, L. I., Tseng, T. C., Huang, Y. T., Sritunyalucksana, K., Thitamadee, S., Wang, H. C. and Lo, C. F. (2014). Draft Genome Sequences of Four Strains of Vibrio parahaemolyticus, Three of Which Cause Early Mortality Syndrome/Acute Hepatopancreatic Necrosis Disease in Shrimp in China and Thailand. Genome Announc 2(5).
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Yang, Y. T., Lee, D. Y., Wang, Y., Hu, J. M., Li, W. H., Leu, J. H., Chang, G. D., Ke, H. M., Kang, S. T., Lin, S. S., Kou, G. H. and Lo, C. F. (2014). The genome and occlusion bodies of marine Penaeus monodon nudivirus (PmNV, also known as MBV and PemoNPV) suggest that it should be assigned to a new nudivirus genus that is distinct from the terrestrial nudiviruses. BMC Genomics 15: 628.
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Kung, Y. J., Lin, P. C., Yeh, S. D., Hong, S. F., Chua, N. H., Liu, L. Y., Lin, C. P., Huang, Y. H., Wu, H. W., Chen, C. C. and Lin, S. S.* (2014). Genetic analyses of the FRNK motif function of Turnip mosaic virus uncover multiple and potentially interactive pathways of cross-protection. Mol Plant Microbe Interact 27(9): 944-955. (*Correspond author)
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Tseng, H. I., Lin, C. P. and Lin, S. S.* (2014). Characterization and identification of Catharanthus roseus epigenetic-related genes that in response to peanut witches’-broom phytoplasma-mediated infection. Plant Pathol. Bull. 23:67-77 (*Correspond author)
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Liu, L. Y., Tseng, H. I., Lin, C. P., Lin, Y. Y., Huang, Y. H., Huang, C. K., Chang, T. H. and Lin, S. S.* (2014). High-throughput transcriptome analysis of the leafy flower transition of Catharanthus roseus induced by peanut witches'-broom phytoplasma infection. Plant Cell Physiol 55(5): 942-957. (*Correspond author) (Cover photo)
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Youngson, N. A., Lin, P. C. and Lin, S. S.* (2014). The convergence of autophagy, small RNA and the stress response - implications for transgenerational epigenetic inheritance in plants. Biomol Concepts 5(1): 1-8. (*Correspond author)
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Chiu, M. T., Lin, C. P., Lin, P. C. and Lin, S. S.* (2013). Enhancement of IgG purification by FPLC for a serological study on the Turnip mosaic virus P1 protein. Plant Pathol. Bull. 22:21-30 (*Correspond author)
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Lin, Y. Y., Fang, M. M., Lin, P. C., Chiu, M. T., Liu, L. Y., Lin, C. P. and Lin, S. S.* 2013. Improving initial infectivity of the Turnip mosaic virus (TuMV) infectious clone by an mini binary vector via agro-infiltration. Botanical Studies 54:22 (*Correspond author)
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Wang, L. Y., Lin, S. S., Hung, T. H., Li, T. K., Lin, N. C. and Shen, T. L. (2012). Multiple domains of the tobacco mosaic virus p126 protein can independently suppress local and systemic RNA silencing. Mol Plant Microbe Interact 25(5): 648-657.
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Kung, Y. J., Lin, S. S., Huang, Y. L., Chen, T. C., Harish, S. S., Chua, N. H. and Yeh, S. D. (2012). Multiple artificial microRNAs targeting conserved motifs of the replicase gene confer robust transgenic resistance to negative-sense single-stranded RNA plant virus. Mol Plant Pathol 13(3): 303-317.
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Lafforgue, G., Martinez, F., Sardanyes, J., de la Iglesia, F., Niu, Q. W., Lin, S. S., Sole, R. V., Chua, N. H., Daros, J. A. and Elena, S. F. (2011). Tempo and mode of plant RNA virus escape from RNA interference-mediated resistance. J Virol 85(19): 9686-9695.
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Wu, H. W.*, Lin, S. S.*, Chen, K. C., Yeh, S. D. and Chua, N. H. (2010). Discriminating mutations of HC-Pro of zucchini yellow mosaic virus with differential effects on small RNA pathways involved in viral pathogenicity and symptom development. Mol Plant Microbe Interact 23(1): 17-28. (*Co-first author)
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Lin, S. S.*, Wu, H. W.*, Elena, S. F., Chen, K. C., Niu, Q. W., Yeh, S. D., Chen, C. C. and Chua, N. H. (2009). Molecular evolution of a viral non-coding sequence under the selective pressure of amiRNA-mediated silencing. PLoS Pathog 5(2): e1000312. (*Co-first author)
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Lin, S. S., Martin, R., Mongrand, S., Vandenabeele, S., Chen, K. C., Jang, I. C. and Chua, N. H. (2008). RING1 E3 ligase localizes to plasma membrane lipid rafts to trigger FB1-induced programmed cell death in Arabidopsis. Plant J 56(4): 550-561.
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Lin, S. S., Henriques, R., Wu, H. W., Niu, Q. W., Yeh, S. D. and Chua, N. H. (2007). Strategies and mechanisms of plant virus resistance. Plant Biotechnol. Rep. 1:125-134 (Review)
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Lin, S. S., Wu, H. W., Jan, F. J., Hou, R. F. and Yeh, S. D. (2007). Modifications of the Helper Component-Protease of Zucchini yellow mosaic virus for Generation of Attenuated Mutants for Cross Protection Against Severe Infection. Phytopathology 97(3): 287-296. (Cover photo)
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Chiang, C. H., Lee, C. Y., Wang, C. H., Jan, F. J., Lin, S. S., Chen, T. C., Raja, J. A. J. and Yeh, S. D. (2007). Genetic analysis of an attenuated Papaya ringspot virus strain applied for cross-protection. Eur. J. Plant Pathol. 118:333-348
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Chen, C. C., Chen, T. C., Raja, J. A., Chang, C. A., Chen, L. W., Lin, S. S. and Yeh, S. D. (2007). Effectiveness and stability of heterologous proteins expressed in plants by Turnip mosaic virus vector at five different insertion sites. Virus Res 130(1-2): 210-227.
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Niu, Q. W.*, Lin, S. S.*, Reyes, J. L., Chen, K. C., Wu, H. W., Yeh, S. D. and Chua, N. H. (2006). Expression of artificial microRNAs in transgenic Arabidopsis thaliana confers virus resistance. Nat Biotechnol 24(11): 1420-1428. (*Co-first author)
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Zhang, X., Yuan, Y. R., Pei, Y., Lin, S. S., Tuschl, T., Patel, D. J. and Chua, N. H. (2006). Cucumber mosaic virus-encoded 2b suppressor inhibits Arabidopsis Argonaute1 cleavage activity to counter plant defense. Genes Dev 20(23): 3255-3268.
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Zhang, X., Henriques, R., Lin, S. S., Niu, Q. W. and Chua, N. H. (2006). Agrobacterium-mediated transformation of Arabidopsis thaliana using the floral dip method. Nat Protoc 1(2): 641-646..