1. Ali H*,# Noyvert D and Lulla V# (2025). Development and Application of MLB Human Astrovirus Reverse Genetics Clones and Replicons. Bio-protocol 15(4): e5201. DOI: 10.21769/BioProtoc.5201.
2. Ali H*, Noyvert D, Hankinson J, Lindsey G, Lulla A, Lulla V. The astrovirus N-terminal nonstructural protein anchors replication complexes to the perinuclear ER membranes. PLoS Pathogengs. 2024 Jul 15;20(7):e1011959. doi: 10.1371/journal.ppat.1011959.
3. Ali H*, Lulla A, Nicholson AS, Hankinson J, Wignall-Fleming EB, O'Connor RL, Vu DL, Graham SC, Deane JE, Guix S, Lulla V. Attenuation hotspots in neurotropic human astroviruses. PLoS Biology. 2023 Jul 17;21(7):e3001815. doi: 10.1371/journal.pbio.3001815.
4. Burnap SA, Ortega-Prieto AM, Jimenez-Guardeño JM, Ali H, Takov K, Fish M, Shankar-Hari M, Giacca M, Malim MH, Mayr M. Cross-Linking Mass Spectrometry Uncovers Interactions Between High-Density Lipoproteins and the SARS-CoV-2 Spike Glycoprotein. Mol Cell Proteomics. 2023 Aug;22(8):100600. doi: 10.1016/j.mcpro.2023.100600.
5. Cappelletto A, Allan HE, Crescente M, Schneider E, Bussani R, Ali H, Secco I, Vodret S, Simeone R, Mascaretti L, Zacchigna S, Warner TD, Giacca M. SARS-CoV-2 Spike protein activates TMEM16F-mediated platelet procoagulant activity. Frontiers in Cardiovascular Medicine. 2023 Jan 4;9:1013262. doi: 10.3389/fcvm.2022.1013262.
6. Ahamad S*, Ali H*, Secco I, Giacca M, Gupta D. Anti-Fungal Drug Anidulafungin Inhibits SARS-CoV-2 Spike-Induced Syncytia Formation by Targeting ACE2-Spike Protein Interaction. Frontiers in Genetics. 2022 Mar 25;13:866474. doi: 10.3389/fgene.2022.866474.
7. Gutmann C*, Takov K, Burnap SA*, Singh B*, Ali H*, et al. SARS-CoV-2 RNAemia and proteomic trajectories inform prognostication in COVID-19 patients admitted to intensive care. Nature Communications. 2021 Jun 7;12(1):3406. doi: 10.1038/s41467-021-23494-1.
8. Braga L*, Ali H*, Secco I, Chiavacci E, Neves G, Goldhill D, Penn R, Jimenez-Guardeño JM, Ortega-Prieto AM, Bussani R, Cannatà A, Rizzari G, Collesi C, Schneider E, Arosio D, Shah AM, Barclay WS, Malim MH, Burrone J, Giacca M. Drugs that inhibit TMEM16 proteins block SARS-CoV-2 spike-induced syncytia. Nature. 2021 Jun;594(7861):88-93. doi: 10.1038/s41586-021-03491-6.
9. Bussani R, Schneider E, Zentilin L, Collesi C, Ali H, Braga L, Volpe MC, Colliva A, Zanconati F, Berlot G, Silvestri F, Zacchigna S, Giacca M. Persistence of viral RNA, pneumocyte syncytia and thrombosis are hallmarks of advanced COVID-19 pathology. EBioMedicine. 2020 Nov;61:103104. doi: 10.1016/j.ebiom.2020.103104.
10. Piperno GM, Naseem A, Silvestrelli G, Amadio R, Caronni N, Cervantes-Luevano KE, Liv N, Klumperman J, Colliva A, Ali H, Graziano F, Benaroch P, Haecker H, Hanna RN, Benvenuti F. Wiskott-Aldrich syndrome protein restricts cGAS/STING activation by dsDNA immune complexes. JCI Insight. 2020 Sep 3;5(17):e132857. doi: 10.1172/jci.insight.132857.
11. Torrini C, Cubero RJ, Dirkx E, Braga L, Ali H, Prosdocimo G, Gutierrez MI, Collesi C, Licastro D, Zentilin L, Mano M, Zacchigna S, Vendruscolo M, Marsili M, Samal A, Giacca M. Common Regulatory Pathways Mediate Activity of MicroRNAs Inducing Cardiomyocyte Proliferation. Cell Reports. 2019 May 28;27(9):2759-2771.e5. doi: 10.1016/j.celrep.2019.05.005.
12. Gabisonia K, Prosdocimo G, Aquaro GD, Carlucci L, Zentilin L, Secco I, Ali H, Braga L, Gorgodze N, Bernini F, Burchielli S, Collesi C, Zandonà L, Sinagra G, Piacenti M, Zacchigna S, Bussani R, Recchia FA, Giacca M. MicroRNA therapy stimulates uncontrolled cardiac repair after myocardial infarction in pigs. Nature. 2019 May;569(7756):418-422. doi: 10.1038/s41586-019-1191-6.
13. Ali H*, Mano M, Braga L, Naseem A, Marini B, Vu DM, Collesi C, Meroni G, Lusic M, Giacca M. Cellular TRIM33 restrains HIV-1 infection by targeting viral integrase for proteasomal degradation. Nature Communications. 2019 Feb 25;10(1):926. doi: 10.1038/s41467-019-08810-0.
14. Agostini S*, Ali H*, Vardabasso C, Fittipaldi A, Tasciotti E, Cereseto A, Bugatti A, Rusnati M, Lusic M, Giacca M. Inhibition of Non Canonical HIV-1 Tat Secretion Through the Cellular Na+,K+-ATPase Blocks HIV-1 Infection. EBioMedicine. 2017 Jul;21:170-181. doi: 10.1016/j.ebiom.2017.06.011.
15. Marini B, Kertesz-Farkas A$, Ali H$, Lucic B, Lisek K, Manganaro L, Pongor S, Luzzati R, Recchia A, Mavilio F, Giacca M, Lusic M. Nuclear architecture dictates HIV-1 integration site selection. Nature. 2015 May 14;521(7551):227-31. doi: 10.1038/nature14226.
16. Lusic M, Marini B, Ali H, Lucic B, Luzzati R, Giacca M. Proximity to PML nuclear bodies regulates HIV-1 latency in CD4+ T cells. Cell Host Microbe. 2013 Jun 12;13(6):665-77. doi: 10.1016/j.chom.2013.05.006.
17. Ali H#, *, Naseem A, Siddiqui ZI. SARS-CoV-2 Syncytium under the Radar: Molecular Insights of the Spike-Induced Syncytia and Potential Strategies to Limit SARS-CoV-2 Replication. Journal of Clinical Medicine. 2023 Sep 20;12(18):6079. doi: 10.3390/jcm12186079.
18. Ali H*, Rahman SA, Akhtar J, Haque SA, Ali S. Editorial: Decoding the genetics of viral evolution. Frontiers in Genetics. 2022 Aug 11;13:978485. doi: 10.3389/fgene.2022.978485.
19. Huntington J, Pachauri M, Ali H, Giacca M. RNA interference therapeutics for cardiac regeneration. Current Opinion in Genetics & Development. 2021 Oct;70:48-53. doi: 10.1016/j.gde.2021.05.007.
20. Braga L*, Ali H*, Secco I*, Giacca M. Non-coding RNA therapeutics for cardiac regeneration. Cardiovascular Research. 2021 Feb 22;117(3):674-693. doi: 10.1093/cvr/cvaa071.
21. Cannatà A, Ali H, Sinagra G, Giacca M. Gene Therapy for the Heart Lessons Learned and Future Perspectives. Circulation Research. 2020 May 8;126(10):1394-1414. doi: 10.1161/CIRCRESAHA.120.315855.
22. Ali H*, Braga L*, Giacca M. Cardiac regeneration and remodelling of the cardiomyocyte cytoarchitecture. The FEBS Journal. 2020 Feb;287(3):417-438. doi: 10.1111/febs.15146.

23. Naseem A., Ali H#. (2020) Innate Immune Signaling in Cardiac Homeostasis and Cardiac Injuries. Systems and Synthetic Immunology. Springer, Singapore.