Alice Boulanger Biology and geoscience, Paul Sabatier University
1 protocol

Laurent NOEL CNRS
1 protocol

Julien LUNEAU Department of Computational Biology, University of Lausanne
1 protocol

Emmanuelle Lauber
  • Research scientist, LIPM, CNRS/INRAE
Research focus
  • Microbiology
  • Study of pathogeny determinants of the bacterium Xanthomonas campestris pv. campestris
  • 1 Author merit

Education

PhD, Univeristé Louis Pasteur Strasbourg, 1998

Lab information

Laboratoire des Interactions Plantes-Microorganismes, Toulouse, France

Publications

1. Denancé N.*, Szurek B.*, Doyle E. L., Lauber E., Fontaine-Bodin L, Carrère S, Guy E., Hajri A., Cerutti A., Boureau T., Poussier S., Arlat M., Bogdanove A. J. and Noël L. D. Two ancestral genes shaped the Xanthomonas campestris tal effector gene repertoire. (2018). New Phytologist., Vol. 219 Issue 1, p391.



2. Cerutti A., Jauneau A., Auriac M-C., Lauber E., Martinez Y., Chiarenza S., Leonhardt N., Berthomé R., Noel LD. (2017) Immunity at cauliflower hydathodes controls infection by Xanthomonas campestris pv. campestris. Plant Physiol. Feb 9. pii: pp.01852.2016. doi: 10.1104/pp.16.01852.



3. Jacques MA., Arlat M., Boulanger A., Boureau T., Carrère S., Cesbron S., Chen NW., Cociancich S., Darrasse A., Denancé N., Fischer-Le Saux M., Gagnevin L., Koebnik R., Lauber E., Noël LD., Pieretti I., Portier P., Pruvost O., Rieux A., Robène I., Royer M., Szurek B., Verdier V., Vernière C. (2016) Using Ecology, Physiology, and Genomics to Understand Host Specificity in Xanthomonas. Annu Rev Phytopathol., 54:163-87.



4. Roux B., Bolot S., Guy E., Denancé N., Lautier M., Jardinaud MF., Fischer-Le Saux M., Portier P., Jacques MA., Gagnevin L., Pruvost O., Lauber E., Arlat M., Carrère S., Koebnik R., Noël L. (2015) Genomics and transcriptomics of Xanthomonas campestris species challenge the concept of core type III effectome. BMC Genomics, 16:975. doi:10.1186/s12864-015-2190-0.



5. Dupoiron S.*, Zischek C.*, Ligat L., Carbonne J., Boulanger A., Dugé de Bernonville T., Lautier L., Rival P., Arlat M., Jamet E., Lauber E§. and Albenne C. (2015). The N-glycan Cluster from Xanthomonas campestris pv. campestris: a Toolbox for Sequential Plant N-glycan Processing. JBC. (* : contribution équivalente; § : corresponding author). J Biol Chem, 290 (10), 6022-36. doi: 10.1074



6. Boulanger, A., Zischek C., Lautier M., Jamet S., Rival P., Carrère S., Arlat M. and Lauber E. (2014) The plant pathogen Xanthomonas campestris pv. campestris exploits N-acetylglucosamine during infection. mBio, 9;5(5), e01527-14.



7. Dugé de Bernonville T., Noël L. D., SanCristobal M., Danoun S., Becker A., Soreau P., Arlat M. and Lauber E. (2014) Transcriptional reprogramming and phenotypical changes associated with growth of Xanthomonas campestris pv. campestris in cabbage xylem sap. FEMS Microbiol Ecol, 89(3):527-41.



8. Darrasse A., Carrère S., Barbe V., Boureau T., Arrieta-Ortiz M. L., Bonneau S., Brin C., Cocciancich S., Durand K., Fouteau S., Gagnevin L., Guerin F., Guy E., Indiana A., Koebnik R., Lauber E., Munoz A., Noël L. D., Pieretti I., Poussier S., Pruvost O., Soustrade I., Rott P., Royer M., Serres-Giardi L., Szurek B., Van Sluys M-A., Verdier V., Vernière C., Arlat M., Manceau C. and Jacques M-A. (2013). Genome sequence of Xanthomonas fuscans subsp. fuscans strain 4834-R reveals that flagellar motility is not a general feature of xanthomonads. BMC Genomics, 14:761.



9. Arrieta-Ortiz M. L., Rodríguez-R L. M., Pérez-Quintero Á. L., Poulin L., Díaz A. C., Arias Rojas N., Bart R., Boch J., Boureau T., Darrasse A., David P., Dugé de Bernonville T., Fontanilla P., Gagnevin L., Guérin F., Jacques M-A., Lauber E., Lefeuvre P., Medina C., Medina E., Montenegro N., Muñoz Bodnar A., Noël L. D., Ortiz Quiñones J. F., Osorio D., Pardo C., Patil P. B., Poussier S., Pruvost O., Restrepo Benavides M., Robène-Soustrade I., Ryan R., Tabima J., Trujillo C., Urrego Morales O. G., Vernière C., Carrère S., Verdier V., Szurek B., Restrepo S., López C., Koebnik R. and Bernal A. (2013). Genomic survey of pathogenicity determinants and VNTR markers in the cassava bacterial pathogen Xanthomonas axonopodis pv. manihotis strain CIO151. PLoS ONE, 8(11): e79704.



10. Guy E., Lautier M., Chabannes M., Roux B., Lauber E., Arlat M. and Noël L.D. (2013). xopAC-triggered Immunity against Xanthomonas Depends on Arabidopsis Receptor-Like Cytoplasmic Kinase Genes PBL2 and RIPK. PLoS One, 8(8):e73469.



11. Déjean G., Blanvillain-Baufumé S., Boulanger A., Dugé de Bernonville T., Carrere S., Jamet S., Zischek C., Lautier M., Girard A-L., Darrasse A., Jacques M-A., Lauber E. and Arlat M. (2013). The xylan utilisation system of the plant pathogen Xanthomonas campestris pv. campestris reveals common features with oligotrophic bacteria and animal gut symbionts. New Phytologist, 198(3):899-915.



12. Pieretti I., Royer M., Barbe V., Carrère S., Koebnik R., Couloux A., Darrasse A., Gouzy J., Jacques M-A, Lauber E., Manceau C., Mangenot S., Poussier S., Segurens B., Szurek B., Verdier V., Arlat M., Gabriel DW, Rott P. and Cociancich S. (2012). Genomic insights into strategies used by Xanthomonas albilineans with its reduced artillery to spread within sugarcane xylem vessels. BMC Genomics, 13:658.



13. Ligat L.*, Lauber E.*, Albenne C., San Clemente H., Valot B., Zivy M., Pont-Lezica R., Arlat M. and Jamet E. (2011). Analysis of the xylem sap proteome of Brassica oleracea reveals a high content in secreted proteins. Proteomics, 11(9), 1798-813. (* : contribution équivalente).



14. Bordes P., Lavatine L., Phok K., Barriot R., Boulanger A., Castanié-Cornet M-P., Déjean G., Lauber E., Becker A., Arlat M., and Gutierrez C. (2011). Insights into the extracytoplasmic stress response of Xanthomonas campestris pv. campestris : Role and regulation of E-dependent activity. J. Bacteriol. 193(1):246-64.



15. Boulanger A., Déjean G., Lautier M., Glories M., Zischek C., Arlat M. and Lauber E. (2010). Identification and regulation of the N-acetylglucosamine utilization pathway of the plant pathogenic bacterium Xanthomonas campestris pv. campestris. J. Bacteriol., 192, 1487-97.



16. Pieretti I., Royer M., Barbe V., Carrere S., Koebnik R., Cociancich S., Couloux A., Darrasse A., Gouzy J., Jacques M-A., Lauber E., Manceau C., Mangenot S., Poussier S., Segurens B., Szurek B., Verdier V., Arlat M., and Rott P. (2009). The complete genome sequence of Xanthomonas albilineans provides new insights into the reductive genome evolution of the xylem-limited Xanthomonadaceae. BMC Genomics, 10:616.



17. Brillet K., Meksem A., Lauber E., Reimmann C. and Cobessi D. (2009). Use of an in-house approach to study the three-dimensional structures of various outer membrane proteins: structure of the alcaligin outer membrane transporter FauA from Bordetella pertussis. Acta Cryst., D65, 326-331.



18. Xu R-Q.*, Blanvillain S. *, Feng J-X., Jiang B-L., Li X-Z., Wei H-Y., Kroj T., Lauber E., Roby D., Chen B., He Y-Q., Lu G-T., Tang D-J., Arlat M. and Tang J-L. (2008). AvrXccAC, a type III effector with a leucine rich repeat domain from Xanthomonas campestris pathovar campestris confers avirulence in vascular tissues of the Arabidopsis thaliana ecotype Col-0. (* : contribution équivalente). J. Bacteriol., 190 (1), 343-55.



19. Blanvillain S.*, Meyer D.*, Boulanger A., Lautier M., Guynet C., Denancé N., Vasse J., Lauber E.*, and Arlat M.* (2007). Plant Carbohydrate Scavenging through TonB-Dependent Receptors: a Feature Shared by Phytopathogenic and Aquatic Bacteria. PLoS ONE, 2(2): e224. doi:10.1371/journal.pone.0000224. (* : contribution équivalente).



20. Meyer D., Cunnac S., Gueneron M., Declercq C., Van Gijsegem F., Lauber E., Boucher C. and Arlat M. (2006). PopF1 and PopF2, two proteins secreted by the type III protein secretion system of Ralstonia solanacearum, are translocators belonging to the HrpF/NopX family. J. Bacteriol., 188 (13), 4903-17.



21. Meyer D., Lauber E., Roby D., Arlat M. And Kroj T. (2005). Optimization of pathogenicity assays to study the Arabidopsis thaliana - Xanthomonas campestris pv. campestris pathosystem. Mol. Plant Patho., 6 (3), 327-33.



22. Lauber E., Jonard G., Richards K. and Guilley H. (2005). Nonregulated expression of TGBp3 of Hordei-like viruses but not of Potex-like viruses inhibits Beet Necrotic Yellow Vein Virus cell-to-cell movement. Arch. Virol., 150 (7), 1459-67.

1 Protocol published
A β-glucuronidase (GUS) Based Bacterial Competition Assay to Assess Fine Differences in Fitness during Plant Infection
Authors:  Julien S. Luneau, Laurent D. Noël, Emmanuelle Lauber and Alice Boulanger, date: 07/05/2022, view: 1257, Q&A: 0

Competition assays are a simple phenotyping strategy that confront two bacterial strains to evaluate their relative fitness. Because they are more accurate than single-strain growth assays, competition assays can be used to highlight slight

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