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Alberto Carbonell Instituto de Biología Molecular y Celular de Plantas
2 protocols

Aleksandr Gavrin Sainsbury Laboratory University of Cambridge
2 protocols

Alexandros Alexandratos University of Athens
7 protocols

Amey Redkar The Sainsbury Laboratory
3 protocols

Editor
Tie Liu
  • Stanford University
Research focus
  • Plant science
  • 2 Author merit

Publications

1. Liu T, Longhurst A, Talavera-Rauh F, Hokin S, and Barton MK. (2016) The Arabidopsis transcriptional
repressor ABIG1 relays ABA signaled inhibition of growth and drought induced senescence. eLife. 5, e13768.

2. Reinhart B, Liu T, Huang T, Kerstetter R and Barton MK (2013) Establishing a framework for the
ad/abaxial regulatory network of Arabidopsis: ascertaining targets of class III HOMEODOMAIN
LEUCINE ZIPPER and KANADI regulation. The Plant Cell 25, 3228-3249.

3. Brandt R, Salla-Martret M, Bou-Torrent J, Musielak, M Stahl T, Lanz C, Ott F, Schmid M, Greb T,
Schwarz T, Sang-Bong C, Barton MK, Reinhart B, Liu T, Quint M, Jean-Christophe P, Martínez-García
J, and Wenkel S. (2012) Genome-wide binding site analysis of REVOLUTA reveals a link between leaf
patterning and light-mediated growth responses. The Plant Journal 72(1), 31-42.

4. Liu T, Ohashi-Ito K, Bergmann D (2009) The rice orthologues of Arabidopsis thaliana stomata bHLH
genes FAMA and MUTE have functions in grass stomata formation. Development 136, 2265-2276.

5. Liu T*, Liu S * (*Co-first author), Guan H, Ma L, Chen Z, Gu H and Qu L (2009) Expression profiling
analysis of the effect of heavy metal lead (Pb) on Arabidopsis. Environmental and Experimental Botany 67,377-386.

6. Jiao Y*, Tausta S *, Gandotra N *, Sun N *, Liu T* (*Co-first author), Clay N, Chen M, Li N, Holford
M, Ma L, Zhao H, Deng X and Nelson T (2009) A transcriptome atlas of rice cell types reveals plant
cellular hierarchies. Nature Genetics 41, 258-263.

7. Jiao Y, Yang H, Ma L, Sun N, Yu H, Liu T, Gao Y, Gu H, Chen Z, Wada M, Gerstein M, Zhao H, Qu
L, and Deng X (2003) A genome wide analysis of blue light regulation of Arabidopsis transcription factor
gene expression. Plant Physiology 133, 1480-1493.

8. Liu T, Reinhart B, Magnani E, Huang T, Kerstetter R and Barton MK (2013) Of blades and branches:
understanding and expanding the Arabidopsis ad/abaxial regulatory network by target gene identification.
Cold Spring Harbor Symposia on Quantitative Biology Volume LXXVII 77, 31-45.

9. Liu T, Tausta S, Gandotra N, Nelson T (2012) Rice seed development: a cornerstone for cereal crops.
Seed Development: OMICS technologies toward improvement of seed quality and crop yield.

10. Nelson T, Tausta S, Gandotra N, Liu T, Ceserani T, Chen M, Jiao Y, Ma L, Deng X, Sun X, Holfold M,
Li N, Sun N and Zhao H (2008) The promise of systems biology for deciphering the control of C4 leaf
development: transcriptome profiling of leaf cell types. Book chapter, Charting New Pathways To C4 Rice.
World Scientific 317-332.

11. Nelson T, Tausta S, Gandotra N and Liu T (2006) Laser microdissection of plant tissue: what you see is
what you get. Annual Review of Plant Biology 57, 181-201.

2 Protocols published
Plastic Embedding and Sectioning of Plant Tissues
Author:  Tie Liu, date: 12/05/2012, view: 7180, Q&A: 0
Plastic (resin) embedding provides exclusively improvements to cellular definition compared to paraffin embedding. The combination of strongly cross-linking paraformaldehyde with glutaraldehyde and post fixed with OsO4 is the fixative of ...
Isolation of Rice Embryo Single Cell Type using Laser Capture Microdissection (LCM)
Author:  Tie Liu, date: 09/20/2012, view: 5729, Q&A: 0
A lot of transcriptional profiling in plant and animals has used RNAs samples from many different cell types. The laser-capture microdissection (LCM) can identify and harvest pure cellular populations directly from heterogenous tissues based on ...
8 Protocols reviewed
Infection of Nicotiana benthamiana Plants with Potato Virus X (PVX)
Potato Virus X (PVX) is the type member of Potexvirus genus, a group of plant viruses with a positive-strand RNA genome (~6.4 kb). PVX is able to establish compatible infections in Nicotiana benthamiana, a commonly used ...
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Soybean Cyst Nematode, Heterodera glycines, Infection Assay Using Soybean Roots
Authors:  Benjamin F. Matthews and Reham M. Youssef, date: 01/20/2016, view: 3106, Q&A: 0
Soybean cyst nematode (SCN; Heterodera glycines), an obligate parasite of plants, is the most damaging pathogen of soybean, causing $469 to $818 million in soybean yield losses annually in the United States. However, there are no soybean ...
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145 Protocols edited
Real-time Analysis of Auxin Response, Cell Wall pH and Elongation in Arabidopsis thaliana Hypocotyls
Authors:  Lanxin Li, S. F. Gabriel Krens, Matyáš Fendrych and Jiří Friml, date: 01/05/2018, view: 242, Q&A: 0
The rapid auxin-triggered growth of the Arabidopsis hypocotyls involves the nuclear TIR1/AFB-Aux/IAA signaling and is accompanied by acidification of the apoplast and cell walls (Fendrych et al., 2016). Here, we describe in detail ...
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In vitro RNA-dependent RNA Polymerase Assay Using Arabidopsis RDR6
Authors:  Kyungmin Baeg, Yukihide Tomari and Hiro-oki Iwakawa, date: 01/05/2018, view: 113, Q&A: 0
RNA-dependent RNA polymerases (RdRPs) in eukaryotes convert single-stranded RNAs into double-stranded RNAs, thereby amplifying small interfering RNAs that play crucial roles in the regulation of development, maintenance of genome integrity and ...
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