Ultrafiltration using Amicon Ultra 0.5 mL Ultracel filters (50k) 1. Centrifuge 0.5 ml of Fob5 buffer (5 mM TRIS, 1 mM EDTA, 5 mM NaCl, and 5 mM MgCl2) through a filter for 3 min at 25°C, at 10000 g. Discard "flow-through". 2. Add 0.1 - 0.2 ml of folded object sample, fill filter up to 0.5 ml with Fob5 and centrifuge for 3 min at 25°C, at 10000 g. Discard "flow-through". 3. Add 0.45 ml of Fob5 and centrifuge for 3 min at 25°C, at 10000 g. Discard flow through. 4. Repeat step 3, 2 more times. 5. Retrieve sample by placing filter inset upside down into a new tube, centrifuge for 3 min at 25°C, at 10000 g.
Readers should cite both the Bio-protocol preprint and the original research article where this protocol was used:
Stömmer, P and Dietz, H(2023). Purification of DNA Origami Nanostructures. Bio-protocol Preprint. bio-protocol.org/prep2313.
Dietz, H., Honemann, M. N., Wenig, M., Feigl, E., Stömmer, P. and Bertosin, E.(2021). Cryo-Electron
Microscopy and Mass Analysis of Oligolysine-Coated
DNA Nanostructures. ACS Nano 15(6). DOI: 10.1021/acsnano.0c10137
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