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CytoTRACE analysis in the mammary epithelial atlas paper (https://doi.org/10.1038/s42003-021-02201-2)

KS Kohei Saeki
SC Shiuan Chen

Last updated date: Sep 6, 2022 Views: 540 Forks: 0

original An abbreviated version of this protocol was published in Communications Biology
Mammary cell gene expression atlas links epithelial cell remodeling events to breast carcinogenesis
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Dear Dr. Yakun Pang,

 

Thank you for your interest in our work.

I think that the best vignette can be found at the CytoTRACE website.
(https://cytotrace.stanford.edu/)

You will find “Install R package” tab on the left. After clicking “I agree”, you will see instructions regarding installation and run.

 

Regarding the specific analysis in our manuscript, you can find a complete code at the Zenodo.

(https://zenodo.org/record/4674274#.Yxfr_HbP1D8)

The file is archived at “Code/Processing_Analysis/CytoTRACE.R”.

 

For specific functions or any further details of CytoTRACE, you may want to contact the developer at cytotrace@gmail.com.

 

Hope that it helps!

 

Best regards,

 

Kohei Saeki

Shiuan Chen

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How to cite：
Readers should cite both the Bio-protocol preprint and the original research article where this protocol was used:
  1. Saeki, K and Chen, S(2022). CytoTRACE analysis in the mammary epithelial atlas paper (https://doi.org/10.1038/s42003-021-02201-2). Bio-protocol Preprint. bio-protocol.org/prep1906.
  2. Saeki, K., Chang, G., Kanaya, N., Wu, X., Wang, J., Bernal, L., Ha, D., Neuhausen, S. L. and Chen, S.(2021). Mammary cell gene expression atlas links epithelial cell remodeling events to breast carcinogenesis. Communications Biology 0(0). DOI: 10.1038/s42003-021-02201-2

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