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Metagenome annotation with dbCAN and AntiSMASH

VC Víctor J. Carrión

Last updated date: Jan 15, 2021 Views: 927 Forks: 0

original An abbreviated version of this protocol was published in Science in Nov, 2019
Pathogen-induced activation of disease-suppressive functions in the endophytic root microbiome
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For the dbCAN and AntiSMASH annotation we used the standard methods described by the authors, the details are in the manuscript and scripts are provided in the zenodo link.


For dbCAN please follow the instrcctions in this website http://bcb.unl.edu/dbCAN2/download/


For Antismash, https://github.com/antismash/antismash


Please do not hesitate in contacting me by email if more information is needed.


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How to cite：
Readers should cite both the Bio-protocol preprint and the original research article where this protocol was used:
  1. Carrión, V(2021). Metagenome annotation with dbCAN and AntiSMASH. Bio-protocol Preprint. bio-protocol.org/prep748.
  2. Carrión, V. J., Perez-Jaramillo, J., Cordovez, V., Tracanna, V., Hollander, M. D., Ruiz-Buck, D., Mendes, L. W., Ijcken, W. F. V., Gomez-Exposito, R., Elsayed, S. S., Mohanraju, P., Arifah, A., Oost, J. V. D., Paulson, J. N., Mendes, R., Wezel, G. P. V., Medema, M. H. and Raaijmakers, J. M.(2019). Pathogen-induced activation of disease-suppressive functions in the endophytic root microbiome. Science 366(6465). DOI: 10.1126/science.aaw9285

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