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Calculating gene correlations with RERconverge

MC Maria Chikina
NC Nathan L Clark

Last updated date: May 7, 2020 Views: 1261 Forks: 0

original An abbreviated version of this protocol was published in eLife in Oct, 2017
Subterranean mammals show convergent regression in ocular genes and enhancers, along with adaptation to tunneling
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Gene-by-environment correlations were calculated with the RERconverge package available on GitHub: https://github.com/nclark-lab/RERconverge


There we provide a full Walk Through of how to use RERconverge to calculate correlations with any trait of interest. This link will take you to the most current version: https://github.com/nclark-lab/RERconverge/wiki/Vignettes


We also provide here the attached pdf of the Walk Through as it is in May 2020. Thanks for your interest.

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pdf RERconvergeAnalysisFullWalkthrough.pdf download
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How to cite：
Readers should cite both the Bio-protocol preprint and the original research article where this protocol was used:
  1. Chikina, M and Clark, N(2020). Calculating gene correlations with RERconverge. Bio-protocol Preprint. bio-protocol.org/prep304.
  2. Partha, R., Chauhan, B. K., Ferreira, Z., Robinson, J. D., Lathrop, K., Nischal, K. K., Chikina, M. and Clark, N. L.(2017). Subterranean mammals show convergent regression in ocular genes and enhancers, along with adaptation to tunneling. eLife. DOI: 10.7554/eLife.25884

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