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Computation of summary statistics, S, Pi, H12, and LD

NG Nandita R. Garud
DP Dmitri A. Petrov

Last updated date: Jan 18, 2023 Views: 460 Forks: 0

original An abbreviated version of this protocol was published in PLoS Genetics
Detection of hard and soft selective sweeps from Drosophila melanogaster population genomic data
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Hello,

 

Would you please consider consulting our code on github for computing H12? 

https://github.com/ngarud/SelectionHapStats

 

Best wishes,

Nandita

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How to cite：
Readers should cite both the Bio-protocol preprint and the original research article where this protocol was used:
  1. Garud, N and Petrov, D(2023). Computation of summary statistics, S, Pi, H12, and LD. Bio-protocol Preprint. bio-protocol.org/prep2123.
  2. Garud, N. R., Messer, P. W. and Petrov, D. A.(2021). Detection of hard and soft selective sweeps from Drosophila melanogaster population genomic data. PLoS Genetics 17(2). DOI: 10.1371/journal.pgen.1009373

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