Improve Research Reproducibility A Bio-protocol resource
bpdetail_icon_lock
Preprint

Regression model of relative fitness (PyR0 model)

FO Fritz Obermeyer
JL Jacob E. Lemieux

Last updated date: Jun 27, 2022 Views: 625 Forks: 0

original An abbreviated version of this protocol was published in Science
Analysis of 6.4 million SARS-CoV-2 genomes identifies mutations associated with fitness
download pdf Download PDF
ask Ask a question
cite How to cite
nfavorite Favorite

Dear Dr. Li, 

The code is open source and available at https://github.com/broadinstitute/pyro-cov. The repository and its associated makefile should provide details for running the code. Please let us know if you are having difficulties. 

kind regards, 

Jacob Lemieux

Copyright: Content may be subjected to copyright.
How to cite：
Readers should cite both the Bio-protocol preprint and the original research article where this protocol was used:
  1. Obermeyer, F and Lemieux, J(2022). Regression model of relative fitness (PyR0 model). Bio-protocol Preprint. bio-protocol.org/prep1747.
  2. Obermeyer, F., Jankowiak, M., Barkas, N., Schaffner, S. F., Pyle, J. D., Yurkovetskiy, L., Bosso, M., Park, D. J., Babadi, M., MacInnis, B. L., Luban, J., Sabeti, P. C. and Lemieux, J. E.(2022). Analysis of 6.4 million SARS-CoV-2 genomes identifies mutations associated with fitness. Science. DOI: 10.1126/science.abm1208

Do you have any questions about this protocol?

Post your question to gather feedback from the community. We will also invite the authors of this article to respond.

post Post a Question
0 Q&A
This protocol preprint was submitted via the "Request a Protocol" track.