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Preprint

Regression model of relative fitness (PyR0 model)

FO Fritz Obermeyer
JL Jacob E. Lemieux

Last updated date: Jun 27, 2022 Views: 621 Forks: 0

original An abbreviated version of this protocol was published in Science in May, 2022
Analysis of 6.4 million SARS-CoV-2 genomes identifies mutations associated with fitness
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Dear Dr. Li, 

The code is open source and available at https://github.com/broadinstitute/pyro-cov. The repository and its associated makefile should provide details for running the code. Please let us know if you are having difficulties. 

kind regards, 

Jacob Lemieux

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How to cite：
Readers should cite both the Bio-protocol preprint and the original research article where this protocol was used:
  1. Obermeyer, F and Lemieux, J(2022). Regression model of relative fitness (PyR0 model). Bio-protocol Preprint. bio-protocol.org/prep1747.
  2. Obermeyer, F., Jankowiak, M., Barkas, N., Schaffner, S. F., Pyle, J. D., Yurkovetskiy, L., Bosso, M., Park, D. J., Babadi, M., MacInnis, B. L., Luban, J., Sabeti, P. C. and Lemieux, J. E.(2022). Analysis of 6.4 million SARS-CoV-2 genomes identifies mutations associated with fitness. Science. DOI: 10.1126/science.abm1208

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