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Image processing and feature extraction

AC Anne E Carpenter

Last updated date: Jun 20, 2022 Views: 582 Forks: 0

original An abbreviated version of this protocol was published in eLife in Mar, 2017
Systematic morphological profiling of human gene and allele function via Cell Painting
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The latest recommended CellProfiler pipelines for Cell Painting are here: https://github.com/broadinstitute/imaging-platform-pipelines/tree/master/JUMP_production (specifically, JUMP_analysis_v3.cppipe)
In the future you are welcome to post to forum.image.sc where the community often asks questions about Cell Painting.
You can find many collections of Cell Painting images at BBBC.org

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How to cite：
Readers should cite both the Bio-protocol preprint and the original research article where this protocol was used:
  1. Carpenter, A(2022). Image processing and feature extraction. Bio-protocol Preprint. bio-protocol.org/prep1735.
  2. Rohban, M. H., Singh, S., Wu, X., Berthet, J. B., Bray, M., Shrestha, Y., Varelas, X., Boehm, J. S. and Carpenter, A. E.(2017). Systematic morphological profiling of human gene and allele function via Cell Painting. eLife. DOI: 10.7554/eLife.24060

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