Generation of Giant Unilamellar Vesicles (GUVs) Using Polyacrylamide Gels

Materials and Reagents

1. 5, 10, and 25 ml serological pipettes

2. 30 mm diameter glass cover slips, round, Menzel Glaser #1 (VWR, catalog number: 631-1347 )

3. 150 mm diameter circular Petri dishes (Fisher Scientific, catalog number: FB0875714 )

4. 15 ml conical tubes (Corning, catalog number: 352095 )

5. 50 ml conical tubes (Corning, catalog number: 352070 )

6. 6-well plates (Corning, catalog number: 3516 )

7. Pipette tips (Appropriate for P1, P10, P20, P100, and P1000 micropipettes)

8. Parafilm (Sigma, catalog number: P7793 )

9. Large glass plate (Approximately 200 mm x 200 mm square, or larger)

10. Glass Drigalski spatula (can be created by melting a glass Pasteur pipette)

11. Razor blades

12. Aluminum foil

13. 100% ethanol (Sigma, catalog number: 51976 )

14. Milli-Q water

15. Phosphate buffered saline (PBS), pH 7.4 (Thermo Fisher Scientific, catalog number: 10010001 )

16. Chloroform (Sigma, catalog number: C2432 )

17. Methanol (EMD Millipore, catalog number: 1060092500 )

18. (3-Aminopropyl)trimethoxysilane (Sigma, catalog number: A3648 )

19. Glutaraldehyde (Sigma, catalog number: G6257 )

20. 40% acrylamide solution (Sigma, catalog number: A4058 )

21. 2% N,N′-Methylenebisacrylamide solution (Sigma, catalog number: M1533 )

22. N,N,N,N-tetramethylethylenediamine (TEMED) (Bio-Rad, catalog number: 1610800 )

23. Ammonium persulfate (APS) (Sigma, catalog number: A3678 )

24. 1,2-dioleoyl-sn-glycero-3-phosphocholine (DOPC) lipids (Avanti, catalog number: 850375 )

25. 1,2-dipalmitoyl-sn-glycero-3-phosphoethanolamine-N-(lissamine rhodamine B sulfonyl) (Rhod-PE) lipids (Avanti, catalog number: 810158 )

Equipment

1. Tweezers (Fisher Scientific, catalog number: 12-000-122 )

2. Set of micropipettes (P1, P10, P20, P100, and P1000)

3. Pipet-Aid

4. Orbital shaker

5. Oven/incubator (capable of maintaining 45 °C)

6. Desiccator/vacuum

7. Vortex

8. Microscope with phase contrast and/or epifluorescence capabilities (Nikon, model: TS100 )

9. Plasma oxidizer (Diener Elektronic, FEMTO)

10. 4 °C fridge

11. -20 °C freezer

Procedure

1. Glass cover slip functionalization

   This portion of the protocol was adapted by methods described by the Engler (Tse and Engler, 2010) and Discher ( Chaudhuri et al., 2010 ) laboratories.

   1. Place the 30 mm circular glass cover slips in a 150 mm diameter circular Petri dish. Fill the dish with 70% ethanol (enough to cover the glass cover slips), and place on an orbital shaker for a few minutes. Remove the ethanol and refill it. Repeat this step 3 times.

      Note: In our hands, the best GUV formation was observed for 30 mm diameter glass cover slips. The same protocol can be adapted for smaller cover slips, and volumes can be adjusted accordingly based on the cover slip area.

   2. Repeat Step A1 with Milli-Q water.

   3. Remove the water from the container. Transfer the cover slips onto a holder (e.g., an old pipette tip rack) as shown in Figure 1, and place them into an oven or incubator set to 45 °C. Incubate them for 20-30 min, or until completely dry.

      
      

      
      Figure 1. Placement of glass cover slips on a holder (e.g., an old pipette tip rack) in Steps A3, A13, and B11
      
      

   4. Plasma treat the glass cover slips for 5-7 min. The upper surface will be “activated”.

   5. While the cover slips are in the plasma cleaner, prepare 50 ml of 10% (v/v) (3-Aminopropyl)triethoxysilane (APTES) in water-free ethanol. Prepare this solution fresh each time in a conical tube. Transfer the solution to a large Petri dish.

   6. After plasma treatment, immediately immerse the cover slips in the APTES solution for 15-30 min at room temperature using tweezers. Ensure that the cover slips are not overlapping.

   7. Remove the APTES solution. Add ethanol to the Petri dish, and gently shake the dish to wash them. Remove the ethanol and repeat this step two more times.

   8. Rinse each cover slip individually with ethanol on both sides. Then rinse with water, and finally PBS. Place the cover slips in a fresh Petri dish.

      Note: It is very important that all of the APTES is removed. If the APTES mixes with glutaraldehyde, it produces a red/brown precipitate and the GUVs will not properly form.

   9. Prepare 50 ml of a 2.5% (v/v) glutaraldehyde solution in PBS. Prepare this solution fresh each time.

   10. Pour the glutaraldehyde solution into the Petri dish containing the cover slips. The “activated” side should be facing up. Incubate the cover slips at room temperature for 15-30 min and ensure that the cover slips are not overlapping.

   11. Remove the glutaraldehyde. Add PBS to the Petri dish and gently rock the dish to rinse the cover slips. Remove the PBS and repeat this washing step two more times.

   12. Rinse the cover slips in the Petri dish three times with Milli-Q water.

   13. Transfer the cover slips onto a holder (e.g., an old pipette tip rack) as shown in Figure 1, and place them into an incubator set to 45 °C for 20-30 min, or until completely dry.

   14. If not using the cover slips right away, transfer the cover slips into a Petri dish and seal it with parafilm. For optimal storage conditions, orient the cover slips with the functionalized surface facing upwards and avoid stacking the cover slips in the petri dish. Store the cover slips in a 4 °C refrigerator; they should remain functionalized for approximately 1 month.

       
       

2. Polyacrylamide gel preparation

   1. Mix the appropriate volume of acrylamide (AA), bis-acrylamide (BAA), and Milli-Q water in a 15 ml conical tube. The total volume should add to 1 ml.

      Notes:

      1. Table 1 shows nine mixes that we have confirmed to successfully produce large quantitates of GUVs. Polyacrylamide formulations were adapted from those used in Wen et al., 2014. To start, we recommend using formulation 1 or 5.

      2. We have found that the variations in PAA stiffness and pore size do not significantly affect the concentration and size distribution of the free-floating GUVs that are generated (Parigoris et al., 2020).

      
      

      Table 1. Polyacrylamide compositions used to successfully generate large populations of GUVs
      

   2. Loosen the lid on the conical tube and place it in the desiccator/vacuum. Degas for approximately 30 min.

   3. While degassing the polyacrylamide, clean a large glass plate with ethanol (approximately 200 mm x 200 mm square), followed by water, and then dry it completely.

   4. After degassing the acrylamide and bis-acrylamide mixture, add 1 μl of Tetramethylethylenediamine (TEMED) to the polyacrylamide mixture.

   5. Add 10 μl of 10% (w/v) ammonium persulfate (APS) to the mixture.

      To make the stock solution, add Milli-Q water to 1 g of APS until a final volume of 10 ml is achieved. Then, vortex well and store aliquots at -20 °C.

   6. Mix the solution quickly with the pipette, and briefly vortex the solution.

   7. Add 45 μl of the polyacrylamide onto the glass plate, one droplet for each desired sample. Leave adequate spacing between each droplet.

      Note: The size of the droplets depends on the diameter of the cover slip. If using a smaller cover slip, the volume of the droplet can be scaled down with the area of the cover slips.

   8. After pipetting all of the polyacrylamide, drop one glass cover slip onto each droplet of polyacrylamide. Touch one side down, and carefully let it fall. Ensure that the functionalized surface of the cover slip is facing the droplet.

      Notes:

      1. Perform Steps B4-B8 as quickly as possible so that the polyacrylamide does not polymerize too early.

      2. If there is an air gap between the PAA and the glass, gently move the glass cover slip back and forth to remove the bubble.

   9. Wait 10-15 min for the polymerization of the gel.

      Use the leftover polyacrylamide in the conical tube to roughly determine when it has polymerized. Pockets of air that form around the edge of the cover slips signal that the gels have sufficiently polymerized.

   10. Wet the cover slip surface with Milli-Q water. Use a razor blade to detach the cover slips from the glass plate; be careful not to crack the cover slips during their removal.

   11. Transfer the cover slips onto a holder (e.g., an old pipette tip rack) as shown in Figure 1, and place them into the incubator at 45 °C for approximately 20-30 min, or until completely dry. The PAA surface should be facing upwards.

       
       

3. GUV formation

   1. Transfer the glass cover slips (30 mm diameter) to a 6-well plate, with one cover slip in each well. The PAA surface should be facing upwards.

      Note: Adjust the well plate accordingly if you use a different size glass cover slip.

   2. Remove the DOPC lipid solution from the -20 °C freezer and keep it on ice to prevent evaporation of the solvent.

      Notes:

      1. The lipid power should be reconstituted in a chloroform/methanol (10:1) solution to a concentration of 1.5 mM. Store all lipid solutions at -20 °C.

      2. We recommend starting with DOPC lipids, but we have confirmed this protocol to work with a variety of neutral and charged lipid types.

      3. To fluorescently visualize the GUVs, add 0.5% Rhod-PE lipids to the DOPC lipid solution.

   3. Mix the lipid solution and add 20 μl to each polyacrylamide gel.

      Note: The volume of lipid suspension depends on the diameter of the cover slip. If using a smaller cover slip, the volume of the droplet can be scaled down with the area of the cover slip.

   4. Use a Drigalski spatula to evenly distribute the lipid solution across each PAA gel.

      Note: Avoid touching the plastic in the plates, as the chloroform/methanol mixture will damage the plastic.

   5. Transfer the plate to a desiccator/vacuum and degas for approximately 15 min. Leave the lid slightly open. If incorporating fluorescently labeled lipids, cover the plate with aluminum foil.

   6. Add 750 μl of the buffer of choice to each well in order to rehydrate the lipid film.

      Notes:

      1. We have confirmed that buffers ranging from 0 mOsm to 1,000 mOsm will yield successful GUV formation. To start, use PBS or 100 mOsm sucrose as the rehydrating solution.

      2. Add the buffer to the side of the well, and not directly over the glass/PAA.

      3. The volume of the rehydrating solution depends on the diameter of the cover slip. If using a smaller cover slip, the volume of the droplet can be scaled down with the area of the cover slip.

   7. Wrap the edge of the plate in parafilm and incubate at 4 °C overnight. If using fluorescently labeled lipids, cover the plate with aluminum foil. Vesicles will be formed by the morning. The GUVs will be free-floating, and can be simply transferred from the wells using a micropipette. Figure 2 shows a representative image of how the GUVs should appear with phase contrast microscopy (Figure 2A) and fluorescent microscopy (Figure 2B) if the Rhod-PE lipids are incorporated.

      Notes:

      1. We have not explored GUV formation at different temperatures; we therefore recommend overnight 4 °C incubation, though GUV formation can be seen after only a few hours.

      2. This technique generates large numbers of free-floating GUVs (> 10⁵ GUVs/ml). The distribution of GUV diameters ranges from ~1 μm to ~40 μm. In our measurements, the mean diameter for various PAA stiffness and porosity conditions was on the order of 10 μm (Parigoris et al., 2020).

      
      
      Figure 2. Representative images of GUV generation. A. Phase contrast image of DOPC GUVs. PAA-lipid gels were rehydrated in 100 mOsm sucrose, and the generated GUVs were resuspended in equiosmolar PBS (diluted to 100 mOsm) to aid in their visualization. Scale bar represent 20 μm. Black arrows point to individual GUVs. B. Maximum Z-projection of fluorescent confocal stack of DOPC GUVs formed in PBS. 0.5% Rhod-PE were added to the lipid mixture to aid in their visualization. Scale bar represents 100 μm.

      Acknowledgments

      This work was supported by the Whitaker International Fellowship to EP. The authors would like to thank Professor Jess G. Snedeker for supporting this project. Figure 1 was generated with Biorender.

      Competing interests

      The authors declare no competing interests.

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