Materials and Reagents

Pipette tips
1. 0.1-10 µl capacity (USA Scientific, catalog number: 1111-3700 )
2. 1-200 µl capacity (VWR, catalog number: 89079-474 )
3. 100-1,250 µl capacity (VWR, catalog number: 53508-924 )
PCR 8-well tube strips (VWR, catalog number: 20170-004 )
50 ml centrifuge tube (VWR, catalog number: 89039-660 )
1.7 ml microcentrifuge tubes (MIDSCI, catalog number: AVSS1700 )
Vacuum driven and disposable bottle top 0.22 µm filter (Merck, catalog number: SCGPT05RE )
Flat bottom, 96-well plate (Greiner Bio One International, catalog number: 655180 )
Purified reovirus stocks (see Berard and Coombs, 2009; Kobayashi et al., 2010 for propagation and purification procedures)
Crushed ice
Standard SDS-PAGE materials and reagents (e.g., 10% SDS-polyacrylamide mini gels)
Coomassie Brilliant Blue stain and destain solutions (Bio-Rad Laboratories, catalog number: 1610435 )
Citrated bovine calf blood (Colorado Serum Company, catalog number: 31023 )
Bleach (Biz4USA, Janitorial Supplies, catalog number: CLO30966CT )
2-Amino-2-(hydroxymethyl)-1,3-propanediol (Tris) (MP Biomedicals, catalog number: 02103133 )
Sodium chloride (NaCl) (Merck, catalog number: SX0420-3 )
0.1 N hydrochloric acid (Sigma-Aldrich, catalog number: 2104 )
0.1 N sodium hydroxide (Sigma-Aldrich, catalog number: 2105 )
Nα-p-tosyl-L-lysine chloromethyl ketone (TLCK)-treated chymotrypsin (Worthington Biochemical, catalog number: LS001432 )
Phenylmethylsulfonyl fluoride (PMSF) (Sigma-Aldrich, catalog number: P7626 )
Isopropyl alcohol (Avantor Performance Materials, Macron, catalog number: 3032-02 )
Dulbecco’s phosphate buffered saline (Thermo Fisher Scientific, Gibco^TM, catalog number: 21600044 )
Magnesium chloride hexahydrate (MgCl₂·6H₂O) (Sigma-Aldrich, catalog number: M9272 )
Ultrapure DNase/RNase-free distilled H₂O (Thermo Fisher Scientific, Invitrogen^TM, catalog number: 10977015 )
Triton X-100 (TX-100) (Sigma-Aldrich, catalog number: X100 )
50% bleach (see Recipes)
Virus storage buffer (VB) (see Recipes)
2 mg/ml TLCK-treated chymotrypsin (see Recipes)
100 mM phenylmethylsulfonyl fluoride (PMSF) (see Recipes)
Phosphate buffered saline supplemented with 2 mM MgCl₂ (PBS^Mg) (see Recipes)
10% Triton X-100 (TX-100) (see Recipes)

Equipment

Personal protective equipment (PPE)
1. Laboratory coat
2. Gloves
3. Eye protection
Biosafety level 2 (BSL-2) laboratory facility
BSL-2 certified tissue culture hood
Solid and liquid waste containers
Autoclave
Vacuum pump and aspirator
Ice bucket
-20 °C freezer
Micropipettes
1. 0.1-2.5 µl capacity (Eppendorf, catalog number: 3123000012 )
2. 2-20 µl capacity (Eppendorf, catalog number: 3123000039 )
3. 20-200 µl capacity (Eppendorf, catalog number: 3123000055 )
4. 100-1,000 µl capacity (Eppendorf, catalog number: 3123000063 )
Digital pH meter (VWR, model: SB70P )
Digital laboratory balance (Mettler Toledo, model: PB1502-S )
NanoDrop spectrophotometer (Thermo Fisher Scientific, Thermo Scientific^TM, model: ND-1000 )
Hot plate stirrer (VWR, catalog number: 12365-382 )
Magnetic stir bar (VWR, catalog number: 58948-273 )
Microcentrifuge (Eppendorf, model: 5424 )
Thermal cycler (Bio-Rad Laboratories, model: S1000^TM )
Temperature controlled water bath (VWR, catalog number: 89501-466 )
Gel imaging system (LI-COR, model: Odyssey^® Classic )
Microplate reader (Molecular Devices, model: FilterMax F5 Multi-Mode )
250 ml glass beaker (VWR, catalog number: 89000-204 )
1,000 ml glass beaker (VWR, catalog number: 89000-212 )
100 ml graduated cylinder (VWR, catalog number: 65000-006 )
1,000 ml graduated cylinder (VWR, catalog number: 65000-012 )
100 ml storage bottle (VWR, catalog number: 89000-234 )
1,000 ml storage bottle (VWR, catalog number: 89000-240 )
Note: This product has been discontinued.

Software

Image Studio Lite (LI-COR)
SoftMax Pro (Molecular Devices)

Procedure

Generation of infectious subviral particles (ISVPs)
1. Propagate and purify reovirus virions as previously described (Berard and Coombs, 2009; Kobayashi et al., 2010). Using a NanoDrop spectrophotometer, determine particle concentration by measuring the optical density of the purified virus stocks at 260 nm (OD₂₆₀; 1 unit at OD₂₆₀ = 2.1 x 10¹² particles/ml) (Smith et al., 1969).
2. In 1 tube of an 8-well tube strip, dilute 2 x 10¹¹ virions into 90 µl of ice cold VB (see Recipes).
3. Add 10 µl of ice cold 2 mg/ml TLCK-treated chymotrypsin (see Recipes) to the diluted virus. Mix by pipetting up and down 3-4 times.
  Note: For an undigested control, substitute 10 µl of ice cold VB for 10 µl of TLCK-treated chymotrypsin.
4. Incubate the reaction for 20 min at 32 °C in a thermal cycler.
  Note: Under these conditions, σ3 is degraded (Joklik, 1972; Borsa et al., 1973a) and µ1 is cleaved (Nibert and Fields, 1992; Chandran et al., 1999).
5. Following digestion, quench chymotrypsin activity by the addition of 1 µl of 100 mM PMSF (see Recipes). Mix by pipetting up and down 3-4 times.
6. Incubate the reaction for 20 min on ice.
7. To confirm that ISVPs are generated, run 2 x 10¹⁰ particles per lane on a 10% SDS-polyacrylamide mini gel. Run the gel for 40-45 min at 200 V constant.
8. Visualize the protein bands by Coomassie Brilliant Blue staining (see Data analysis, Figure 1).
9. Store ISVPs on ice, and use within 2-3 h for hemolysis experiments.
Preparation of bovine red blood cells (RBCs)
1. Perform all steps on ice or at 4 °C.
2. Transfer 1 ml of citrated bovine calf blood to a microcentrifuge tube.
  Note: Citrated bovine calf blood should be used within 2 weeks of the draw date.
3. Pellet the RBCs by centrifugation at 500 x g for 5 min.
  Note: RBCs are the source of membranes for hemolysis experiments.
4. Aspirate and discard the supernatant.
5. Resuspend the RBCs in 1 ml of ice cold PBS^Mg (see Recipes). Mix by gently pipetting up and down.
6. Repeat Steps B3-B5 until the supernatant remains clear after pelleting.
7. Resuspend the washed RBCs in ice cold PBS^Mg at a 30% (vol/vol) concentration. Mix by gently flicking the side of the tube.
  Note: Estimate the RBC pellet volume by using the volume markers on the microcentrifuge tube.
8. Store RBCs on ice, and use immediately for hemolysis experiments
ISVP-induced hemolysis assay
1. In separate microcentrifuge tubes, assemble the following reactions on ice:
  1. 33.3 µl VB + 3.7 µl 30% RBCs (0% hemolysis control)
  2. 30.3 µl VB + 3.7 µl 30% RBCs + 3 µl 10% TX-100 (100% hemolysis control, see Recipes)
  3. 3.3 µl VB + 3.7 µl 30% RBCs + 30 µl ISVPs
2. Mix the reactions by gently flicking the side of the tubes.
3. Incubate the reactions for 1 h (T3D reovirus) or for 2 h (T1L reovirus) at 37 °C in a water bath.
  Note: Under these conditions, ISVP-to-ISVP* conversion is induced (Chandran et al., 2002; Sarkar and Danthi, 2010) and the µ1-derived pore forming peptides are released (Nibert et al., 1991; Chandran et al., 2002; Odegard et al., 2004; Nibert et al., 2005; Zhang et al., 2005; Agosto et al., 2006; Ivanovic et al., 2008).
4. Place the reactions on ice for 20 min.
5. Pellet intact RBCs by centrifugation at 500 x g for 5 min.
  Note: This step should be performed at 4 °C.
6. Transfer 20 µl of each supernatant to individual wells of a 96-well plate.
7. Dilute each transferred supernatant with 80 µl of VB. Mix by pipetting up and down 3-4 times.
8. To quantify the amount of hemoglobin released (i.e., RBC lysis), measure the absorbance (A) of the diluted supernatants at 405 nm using a microplate reader. A values are recorded on SoftMax Pro software.
9. Calculate the percent hemolysis (see Data analysis).

Data analysis

Generation of infectious subviral particles (ISVPs)
1. Record and analyze the results using a gel imaging system and Image Studio Lite software (Figure 1).
  1. Virions contain λ1,2,3, µ1C, σ2, and σ3.
  2. ISVPs contain λ1,2,3, µ1C, δ, and σ2.
  Note: The appearance of δ, the loss of µ1C, and the loss of σ3 indicate the transition from virions to ISVPs. λ1,2,3 and σ2 should remain unchanged.
  
  Figure 1. SDS-PAGE gel of reovirus virions and ISVPs
ISVP-induced hemolysis assay
1. All hemolysis experiments should be repeated for at least three independent replicates.
2. Calculate the percent hemolysis using the following formula:
  
  [(A_sample - A_buffer)/(A_TX-100 - A_buffer)] x 100
  1. A_buffer represents the supernatant derived from VB and RBCs.
  2. A_TX-100 represents the supernatant derived from VB, RBCs, and TX-100.
  3. A_sample represents the supernatant derived from VB, RBCs, and ISVPs.
3. When comparing the hemolytic capacity of different reovirus strains, calculate P values using Student’s t-test.
4. Use graphing software to plot percent hemolysis.
  Note: For T3D reovirus, 40-60% hemolysis is typically observed after 1 h incubation at 37 °C.

Notes

When possible, all procedures are performed in a BSL-2 certified tissue culture hood.
Laboratory personnel should use appropriate PPE.
All solid waste is autoclaved prior to disposal.
All liquid waste is inactivated with 50% bleach prior to disposal.

Recipes

50% bleach
In a storage bottle, dilute 50 ml of 100% bleach into 50 ml of ultrapure H₂O
Virus storage buffer (VB) (10 mM Tris, pH 7.4, 15 mM MgCl₂, and 150 mM NaCl)
1. In a glass beaker, dissolve the following into 900 ml of ultrapure H₂O:
  1.21 g Tris
  3.05 g MgCl₂·6H₂O
  8.77 g NaCl
2. Mix at room temperature using a magnetic stir bar on a stir plate
3. Adjust to pH 7.4 with 0.1 N hydrochloric acid
4. In a graduated cylinder, bring the final volume up to 1,000 ml with ultrapure water
5. Transfer the solution to a storage bottle
6. Sterilize by autoclaving
7. Store at room temperature3.
2 mg/ml Nα-p-tosyl-L-lysine chloromethyl ketone (TLCK)-treated chymotrypsin
1. In a centrifuge tube, dissolve 100 mg of TLCK-treated chymotrypsin into 50 ml of ultrapure H₂O
2. Mix at room temperature by gently inverting the tube until the solution becomes clear
3. Transfer 1 ml aliquots to microcentrifuge tubes
4. Store at -20 °C
100 mM phenylmethylsulfonyl fluoride (PMSF)
1. In a microcentrifuge tube, dissolve 17.4 mg of PMSF into 1 ml of isopropyl alcohol
2. Mix at room temperature by gently inverting the tube until the solution becomes clear
3. Store at -20 °C
Phosphate buffered saline supplemented with 2 mM MgCl₂ (PBS^Mg)
1. In a glass beaker, dissolve the following into 900 ml of ultrapure H₂O:
  9.55 g Dulbecco’s phosphate buffered saline
  0.41 g MgCl₂·6H₂O
2. Mix at room temperature using a magnetic stir bar on a stir plate
3. Adjust to pH 7.4
4. In a graduated cylinder, bring the final volume up to 1,000 ml with ultrapure water
5. Sterilize by filtering through a 0.22 µm bottle top filter
6. Store at room temperature
10% Triton X-100 (TX-100)
1. In a glass beaker, dissolve the following into 80 ml of ultrapure H₂O:
  0.12 g Tris
  0.31 g MgCl₂·6H₂O
  0.88 g NaCl
  10 ml of 100% TX-100
2. Mix at room temperature using a magnetic stir bar on a stir plate
3. Adjust to pH 7.4
4. In a graduated cylinder, bring the final volume up to 100 ml with ultrapure water
5. Transfer the solution to a storage bottle
6. Sterilize by autoclaving
7. Store at room temperature

Acknowledgments

This protocol was adapted from previously published studies (Chandran et al., 2002; Sarkar and Danthi, 2010). Research reported in this publication was supported by the National Institute of Allergy and Infectious Diseases of the National Institutes of Health under award numbers 1R01AI110637 (to P.D.) and F32AI126643 (to A.J.S.) and by Indiana University Bloomington. The content is solely the responsibility of the authors and does not necessarily represent the official views of the funders. The authors declare no conflict of interest.

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