Preparation of Single Cell Suspensions from Mouse Aorta

Materials and Reagents

1. 50 ml Falcon tube (VWR International, CellStar^®, catalog number: 188271 )
   
2. 100 µm cell strainer (BD, catalog number: 352360 )
   Note: Currently, it is “Corning, Falcon^®, catalog number: 352360”.
   
3. 1 ml syringe (Henke-Sass, Wolf GmbH, Soft-JECT^®, catalog number: 5010-200V0 )
   
4. 5 ml syringe (BD, catalog number: 309646 )
   
5. Needle-26G (B. Braun Medical Inc., catalog number: 4657683 )
   
6. 6-well plate (BD Falcon, catalog number: 353046 )
   Note: Currently, it is “Corning, Falcon^®, catalog number: 353046”.
   
7. 1.5 ml Eppendorf tube (Eppendorf AG, catalog number: 0030123328 )
   
8. Trypan blue solution (Sigma-Aldrich, catalog number: 93595 )
   
9. Phosphate-buffered saline (PBS), pH 7.4 (Thermo Fisher Scientific, Gibco^TM, catalog number: 10010023 )
   
10. Dulbecco’s phosphate-buffered saline (DPBS) (Thermo Fisher Scientific, Gibco^TM, catalog number: 14040133 )
    
11. Fetal bovine serum (FBS) (PAN Biotech UK Ltd., catalog number: P30-1506 )
    
12. Ethylenediaminetetraacetic acid (EDTA) (Sigma-Aldrich, catalog number: E6758 )
    
13. Collagenase from Clostridium histolyticum, type I (Sigma-Aldrich, catalog number: C0130 )
    
14. Collagenase from Clostridium histolyticum, type XI (Sigma-Aldrich, catalog number: C7657 )
    
15. Hyaluronidase from bovine testes, type I-s (Sigma-Aldrich, catalog number: H3506 )
    
16. DNase I (Sigma-Aldrich, catalog number: 11284932001 )
    
17. 4-(2-Hydroxyethyl)-1-piperazineethanesulfonic acid (HEPES) (1 M) (Thermo Fisher Scientific, Gibco^TM, catalog number: 15630106 )
    
18. Ethanol solution (Sigma-Aldrich, catalog number: 48075 )
    
19. Anti-mouse CD45 APC antibody (Thermo Fisher Scientific, eBioscience, catalog number: 17-0451-82 )
    
20. LIVE/DEAD^® fixable blue dead cell stain kit (Invitrogen, catalog number: L23105 )
    Note: Currently, it is “Thermo Fisher Scientific, Molecular Probes^TM, catalog number: L23105”.
    
21. Fc block (anti-CD16/32) (Thermo Fisher Scientific, eBioscience, catalog number: 16-0161-82 )
    
22. FACS buffer (see Recipes)
    
23. EDTA buffer (see Recipes)
    
24. Enzyme cocktail (see Recipes)

Equipment

1. Dissecting scissors (Fine Science Tools, catalog number: 91460-11 )
   
2. Curved forceps (Fine Science Tools, catalog number: 11073-10 )
   
3. CO₂ supply machine (Next Advance, model: Quietek CO₂ induction system )
   
4. Neubauer cell counting chamber (Marienfeld-Superior)
   
5. Microscope (Carl Zeiss Microscopy, model: Axiovert 40C )
   
6. Dissecting microscope equipped with cold light (Carl Zeiss Microscopy, model: Stemi2000 )
   
7. Water bath (Thomas Scientific, model: 1196x11 )
   
8. BD LSRFortessa (BD Bioscience)

Procedure

1. Isolation of mouse aorta
   1. Euthanize mouse by CO₂ as approved by the appropriate Animal Care and Use Committee.
      
   2. Place the mouse in supine position and fix arms and legs onto foam plate with needles.
      
   3. Spray 75% ethanol onto abdominal fur, and draw blood by cardiac puncture using 26G needle fixed to a 1 ml syringe.
      
   4. Cut skin, subcutaneous tissue, and open peritoneal cavity from abdomen to thorax along the middle line; fix skin/subcutaneous tissue onto a foam plate with needles.
      
   5. Open the mediastinum and cut off ribs.
      
   6. Puncture the right atrium using a 26G needle.
      
   7. Use a 5 ml syringe with a 26G needle attached, perfuse the remaining blood in the aorta from left ventricle with 5 ml 2 mM EDTA buffer, 10 ml PBS, and 10 ml FACS buffer, respectively. To avoid blood contamination, additional 3 perfusions using 5 ml FACS buffer each are needed during dissection steps. Following this, the aorta should be white.
      
   8. Remove intestine, spleen, liver, lung, and leave heart, kidneys, and aorta in situ.
      
   9. Under a dissecting microscope equipped with a cold light source (magnification, 2.5x), carefully dissect and remove adipose tissue that is located adjacent to the adventitia while leaving the aorta adventitia intact. At this step, there is no morphologically definable tissue identifier to distinguish adventitia and adjacent adipose tissue (Figure 1). However the adipose tissue is soft and can be removed easily; aorta adventitia is tight.
      
      
      Figure 1. Aorta anatomy in situ. Aorta was dissected from a 78-week old Apoe^-/- mouse. Artery branches are indicated. Blue dashed line indicates position of diaphragm. The plaques in aorta segments are white indicated by asterisks. The adjacent adipose tissue is indicated by blue arrows.
      
      
   10. Carefully remove any lymph nodes that are close to the aorta (Figure 2). Lymph nodes are light brown. There are also some small lymph nodes in adjacent adipose tissue that are not visible with the naked eye requiring a dissection microscope for detection and removal.
       
       
       Figure 2. Lymph nodes adjacent to aorta. Two lumbar lymph nodes adjacent to the abdominal aorta adventitia are indicated by black arrows. There are also invisible small lymph nodes close to or within the paraaortic adipose tissue that line the entire paraaortic connective tissue.
       
       
   11. Main artery branches should be left untouched (0.5 cm long from their branching location): Innominate artery, left carotid artery, left subclavian artery, renal arteries, celiac artery, and the common iliac artery (Figure 1). 
       
   12. Harvest whole aorta and cut it at the level of diaphragm (Figure 1) into two segments: Abdominal aorta and thoracic aorta if analyses of individual aorta segments is needed.
       
   13. To study cells from the adventitia vs plaques, detachment of plaque (Figure 1) from the intima is needed: Open aorta longitudinally, fix it with needles, and place the intima side en face; carefully remove the plaque with a curved forceps. Plaque is white, easy to distinguish, and removed without effort.
       
   14. Keep aorta segments in ice-cold FACS buffer in 6-well plates until enzyme digestion.
       
       
2. Enzyme digestion (Grabner et al., 2009; Hu et al., 2015)
   1. Enzyme cocktail: 400 U/ml collagenase type I, 120 U/ml collagenase type XI, 60 U/ml hyaluronidase and 60 U/ml DNase1, 20 mM HEPES in Dulbecco’s phosphate buffered saline (DPBS) containing calcium.
      
   2. Transfer aorta from the 6-well plate to a 1.5 ml Eppendorf tube containing 0.5 ml enzyme cocktail. Cut aorta tissue into small pieces using scissors.
      
   3. Transfer enzyme cocktail with aorta tissue to a 50 ml Falcon tube. Add additional 2 ml enzyme cocktail (2.5 ml enzyme cocktail for each thoracic and abdominal aorta total).
      
   4. Transfer tube containing aorta tissue pieces to a water bath for 50 min digestion at 37 °C with slow shaking.
      
      
3. Prepare immune cell suspension from aorta
   1. After 50 min, pour the digestion solution onto a 100 µm cell strainer which is placed on the top of a new 50 ml Falcon tube.
      
   2. Mash remaining aorta tissue with syringe plunger and rinse cell strainer with 5 ml FACS buffer.
      
   3. Collect flowthrough from steps C1-2 and centrifuge at 300 x g, 4 °C for 10 min.
      
   4. Carefully remove supernatant after centrifugation, and resuspend cell pellet in 2 ml FACS buffer.
      
   5. Count aortic cells after mixing with trypan blue under a light microscope.
      
      
4. Aorta cell staining and flow cytometry
   
   1. Centrifuge cell suspension at 300 x g, 4 °C for 5 min.
      
   2. To block Fc receptors, incubate cell pellet in 100 µl 1:100 diluted anti-CD16/32 mAb in FACS buffer (1 µg/ml final concentration) at 4 °C for 20 min.
      
   3. Fill the staining tube with 300 µl FACS buffer and centrifuge as step D1.
      
   4. Discard the supernatant and incubate the cell pellet with 100 µl 1:200 diluted anti-mouse CD45 mAb in FACS buffer (1 µg/ml final concentration) at 4 °C for 20 min.
      
   5. Fill the staining tube with 300 µl FACS buffer and centrifuge as in step D1.
      
   6. Resuspend the cell pellet with 200 µl FACS buffer and keep the sample on ice until FACS.
      
   7. To exclude dead cells, DAPI, PI or LIVE/DEAD cell viability assay dye, like Indo-1, is needed to stain with the cells before measurement.

Notes

1. To avoid cell contamination from blood or tissues adjacent to the aorta, the perfusion steps and removal of associated adipose tissue as well as lymph nodes should be done very carefully under the microscope. IF staining showed that FALCs are present in the paraaortic adipose tissue sometimes close to the adventitia.
   
2. Blood should be completely flushed out of the aorta before digestion. EDTA buffer prevents blood clotting, and it is initially used for perfusing the aorta. However, EDTA can inhibit the activity of digestion enzymes that require Ca⁺⁺; EDTA needs to be flushed out before digestion is initiated.
   
3. During dissection of the aorta, intermittently spray FACS buffer onto the aorta to prevent drying.
   
4. Calcium is required for collagenase activity. Therefore, DPBS with calcium is recommended for preparing the enzyme cocktail.
   
5. The total number of aortic cells after digestion varies depending on age, sex, diet, and mouse genotype.
   
6. Enzyme activity may differ from batch to batch. Enzyme activity tests of each batch are needed.
   
7. Enzyme digestion can remove some surface antigens. Therefore, it is necessary to test each surface marker after enzyme digestion. For example, CD138 detection will be low after digestion.
   
8. During digestion, some cells will undergo apoptosis. Therefore, flow cytometry staining of live/dead cells is strongly recommended using DAPI, PI or other dye.
   
9. After digestion, tissue fragments will be generated. In order to get ‘clean’ FACS plots, anti-mouse CD45 mAb (a panleukocyte marker) and Indo-1 (a marker for dead cell staining) are added and gated (Figure 3).
   
   
   Figure 3. FACS profile and gating for living CD45⁺ cells. Aorta single cell suspensions were prepared from a 78 week-old Apoe^-/- mouse. Cells were stained with anti-CD45 mAb and dead cells using Indo-1.

Recipes

1. FACS buffer
   PBS + 2% FBS
   
2. EDTA buffer
   PBS + 2 mM EDTA
   
3. Enzyme cocktail
   400 U/ml collagenase type I
   120 U/ml collagenase type XI
   60 U/ml hyaluronidase and 60 U/ml DNase1
   20 mM HEPES in Dulbecco’s phosphate buffered saline (DPBS) containing calcium

Acknowledgments

This work was supported by the German Research Council (HA 1083/15-4 to A.J.R.H.; MO 3052/1-1 to S.M., and YI 133/2-1 to C.Y.) and the European Research Council (AdG 249929 to C.W.).

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