Human Auto-IgG Purification from High Volume Serum Sample by Protein G Affinity Purification

Materials and Reagents

1. Nunc 96-Well U Bottom (Thermo Fisher, catalog number: 268200)

2. Syringes Plastipak^TM 20 mL Luer-Lok^TM (BD, catalog number: 302237)

3. 0.2 µm filters (Sigma-Aldrich, Millipore, catalog number: SLGP033RS)

4. 50 mL centrifuge tubes (Sigma-Aldrich, Greiner, catalog number: T2318-500EA)

5. 1.5 mL Eppendorf Safe-Lock Tubes (Eppendorfs, catalog number: 0030120086)

6. SnakeSkin^TM Dialysis Tubing, 10K MWCO, 22 mm (Thermo Fisher, catalog number: 68100)

7. SnakeSkin^TM Dialysis Clips (Thermo Fisher, catalog number: 68011)

8. Protein G Sepharose 4 Fast Flow, 5 mL (Sigma-Aldrich, catalog number: GE17-0618-01) storage at 4 °C

9. Econo-pac chromatography columns, package of 50 (Bio-Rad, catalog number: 7321010)

10. Two-way Stopcocks (Bio-Rad, catalog number: 7328102)

11. Compound Sodium Lactate Solution for Infusion BP (Hartmann's Solution for infusion) in Viaflo, 1,000 mL (Baxter, catalog number: FKE2324)

12. Bradford Reagent (Sigma-Aldrich, catalog number: B6916)

13. Ethanol, Absolute, Molecular Biology Grade, 500 mL (ThermoFisher, catalog number: 16606002)

14. Sucrose, Molecular Biology Grade (AlfaAesar by Thermo Fisher Scientific, catalog number: J65148.A1)

15. Trizima Base (ThermoFisher, catalog number: BP152-500)

16. Glycine (Sigma-Aldrich, catalog number: 50046)

17. HCl (Sigma-Aldrich, catalog number: H1758)

18. Neutralisation Buffer: Trizma base 1 M (pH 8.0) (see Recipes)

19. Elution Buffer: Glycine 100 mM (pH 2.3) (see Recipes)

20. Storage buffer: 20% Ethanol (see Recipes)

21. Washing buffer: Hartmann's Solution for Infusion (Compound Sodium Lactate) in Viaflo, 1,000 mL (see Recipes)

Equipment

1. pH Meter Mettler Toledo^TM FiveEasy^TM F20 pH/mV Meter (Mettler Toledo, catalog number: 15543360)

2. Centrifuge 5810R (Eppendorf, catalog number: 5811000465)

3. PIPETMAN Classic Starter Kit, P20, P200, P1000 (Gilson, catalog number: F167300)

4. Laboratory stand Model SBS-LS-100 (Expondo, catalog number: EX10030473)

5. Borosilicate Glass Tall Form Beakers 2 L (ThermoFisher, catalog number: 15499083)

Procedure

1. Preparation of the protein G column

   1. Resuspend two vials of protein G Sepharose (5 mL each) in 50 mL of Hartmann’s solution in a 50-mL tube.

   2. Centrifuge at 41 × g for 5 min, gently pour off the Hartmann’s solution by decantation, and add fresh Hartmann’s solution to top up the 50-mL tube; repeat twice.

   3. Wash the column with 100% ethanol, and then with Hartmann’s solution.

   4. Add protein G solution to the column with a plastic Pasteur pipette until the column is full. The two-way stopcock should be closed (horizontal) to avoid the loss of protein G. The length of the packed protein G column should be 6–8 cm (the empty colums is 12cm)".

   5. Open the two-way stopcock (vertical) and let all the solution slowly run down (to allow the protein G to deposit at the bottom of the column). Do not permit protein G to dry, always leave at least 1 mL of Hartmann’s solution on top of the beads (Figure 1A).

      
      

2. Running the sample through the protein G column

   1. Centrifuge the serum at 2,000 × g for 15 min to get rid of particulates before dilution. A second centrifugation may be required to achieve this.

   2. Dilute the serum 1:3 in Hartmann’s solution: 20 mL of serum and 40 mL of Hartmann’s solution, for a total of 60 mL of diluted serum.

   3. Add the diluted serum (60 mL) to the column with a plastic Pasteur pipette. Run the serum slowly through the column, adjusting the stopcock to half closed for 1 drop/second, and setting 1 min on a timer (1 mL of IgG should pass through the column in 1 min). Firstly, top up the column with serum, then open the stopcock and start the purification. Continue topping up the column until all serum is transferred into the column.

   4. Run the diluted serum slowly (1 mL/min) through, and collect the flow through in a 50-mL tube.

   5. Run the flow through through the column again, then discard or store the flow through for further analysis (Figure 1B).

      
      

3. Washing any non-specific binding with HS

   1. Run 60–100 mL of Hartmann’s solution through the column, to wash away any non-specific binding (Figure 1C).

   2. Check Hartmann’s flow through for IgG, using the Bradford reagent: Resuspend 20 μL of eluted flow through in 100 μL of Bradford reagent, using a well of a 96-well plate. Continue adding Hartmann’s solution until no blue colour is detected, then start eluting with glycine (Procedure D). The blue colour means that there are still other unbound protein in the column (not IgG) that should be removed before elution.

      
      

4. Elution with glycine pH 2.3 and Tris pH 8.0

   1. Place 30 Eppendorf tubes (1.5 mL) on ice. Add 100 μL of 1 M Tris, pH 8.0 into each tube (Figure 1D).

   2. Add 30 mL of 100 mM glycine pH 2.3 to the column, and elute 900 μL of flow through into each prepared tube. Run glycine slowly through the column, adjusting the stopcock to half closed for 1 drop/second and setting 1 min on a timer (1 mL of IgG should pass through the column in 1 min). Firstly, top up the column with glycine, then open the stopcock and start elution from the first tube. When the column needs to be topped up, close the stopcock and add glycine, as above. Shake each fraction, to neutralize glycine with Tris and to protect the sample. Usually, there is no IgG in the first four tubes.

   3. Check the presence of IgG in all tubes using the Bradford assay: Resuspend 20 μL of eluted solution from each tube with 100 μL of Bradford reagent using 30 wells of a 96-well plate. The last tube should have no blue colour.

   4. Pool the highly concentrated fractions, as indicated by the intense blue colour, into one 50-mL tube. For 20 mL of serum (diluted in 40 mL of Harmann’s = 60 mL of overall solution), the yield should be approximately 20 tubes.

   5. Run 60 mL of Hartmann’s Solution (1 mL/min) to remove any residual glycine from the column.

   6. Check if there is no glycine in the flow through with the Bradford assay, as in step D3.

   7. Store the column at 4 °C in 20% ethanol to prevent contaminations. The same column can be used up to five times.

      
      

   
   Figure 1. IgG purification steps. A. Column preparation. Wash the column with 20 mL of 100% ethanol and then 20 mL of binding buffer (HS), and then add the protein G Sepharose slurry from the vials to the column. B. Serum running. Slowly apply diluted serum to the column twice (1 mL/min). C. column washing. Wash protein G beads in 100 mL of binding buffer. D. Elute the bound IgG fraction by adding 20 mL of 100 mM glycine pH 2.3 to the column, and collect in 20 tubes (1.5-mL Eppendorf tubes) pre-filled with Tris buffer. E. IgG dialysis. Dialyse purified IgG at 4 °C overnight in Hartmann’s solution using a 10 kDa dialysis membrane. F. IgG concentration. Move the IgG from the beaker into a tray, covered with sucrose and left until has reached the right concentration; the sucrose starts to slowly liquefy after approximately 20 min and the sample is concentrated 2x after 1 h. G. IgG aggregates. IgG aggregates (red circle) may form during overnight dialysis, but these can be removed with a spin at 657 × g for 10 min.

   
   

5. Dialysis

   1. Fill a beaker with 1 L of Hartmann’s solution.

   2. Cut approximately 10 cm of snakeskin dialysis tubing, fold over one end, and secure with a clip. Then, pipette the IgG solution into it, leaving approximately an extra third volume of air.

   3. Fold over the top and secure with a clip.

   4. Place the dialysis bag into the beaker and leave it on a stirrer at 4°C, allowing the sample to dialyse overnight (Figure 1E).

      
      

6. Sucrose concentration

   1. Move the dialysis preparation from the beaker into a tray, cover with sucrose, and leave until the sample has reached the right concentration—the exact time will depend upon the starting concentration of the dialysed sample, as it may take a couple of hours and it may need sucrose changing after 1 h (Figure 1E).

   2. Transfer the sample into a 50-mL tube.

   3. Centrifuge the sample at 657 × g for 10 min and transfer the IgG solution into a fresh tube to remove aggregates. Aggregates may still form later but they can be removed with another spin at 657 × g for 10 min (Figure 1G).

   4. Filter the sample through a 0.2 μm filter.

   5. Store the IgG sample at 4 °C.

Data analysis

IgG concentration is measured using a Nanodrop 2000 after purification, after dialysis, and after sucrose concentration.

1. Open the Nanodrop 2000 software and select Protein 280. Then select "IgG" as sample type.

2. Pipette 1.5 μL of Hartmann’s solution onto the lower measurement pedestal, then click on "Blank" to measure the blank.

3. Clean residual Hartmann’s solution with a tissue. Pipette 1.5 μL of IgG solution onto the lower measurement pedestal, then click on "measure" to measure the sample.

4. An OD₂₈₀ graph is then provided, together with IgG concentration (Figure 2).

5. Human IgG purified from serum has a concentration from 7 mg/mL to 10 mg/mL, while human IgG purified from plasma has a concentration between 5 mg/mL and 7 mg/mL.

6. The OD₂₈₀ graph is used to assess the specificity and quantitative yield of the purification procedure. In particular, OD_260/280 ratio is used to check sample purity and possible contamination by nucleic acids (absorbance at 260). An OD_260/280 less than 0.60 indicate pure protein yield. Hartmann’s solution (salt buffer) is used as IgG buffer to help minimize the presence of nucleic acids.

   
   

   
   Figure 2. Purified IgG OD₂₈₀ graph. Red arrows indicate salts (absorbance at 230), DNA and RNA (absorbance at 260), and IgG (absorbance at 280). The high salt peak is caused by salts in the Hartmann’s solution (IgG buffer). OD_260/280 ratio is 0.51, IgG concentration is 10.10 mg/mL.

Notes

Factors affecting IgG binding and stability

Due to issues related to temperature fluctuations in the laboratory during summer (defect in the air-conditioning), serendipitously initially IgG were purified either at high room temperature (30 °C) or at standard room temperature (20 °C). Subsequently, the IgG solution purified at 30 °C was found not to be active by collaborating groups when used in in vivo experiments, suggesting that the very high room temperature may have negatively affected either IgG binding to protein G or IgG stability, as the manufacturer recommended room temperature (20 °C) as optimal.

Another factor that affects IgG binding and stability is pH. Low pH (2.5–3.0) is commonly used during protein G elution to break the ionic and hydrogen bonds between the antigen and antibody. IgGs used for this project were eluted at a lower pH 2.3, to achieve a more complete elution yield.

Other factors that may negatively affect IgG binding to protein G include protein G beads freezing (freezing may cause detachment of the protein G from the agarose beads) and column flow rate (high flow rate leading to IgG loss, as IgG would not have sufficient time to bind to Fc receptors on protein G). Finally, according to the manufacturer’s instructions, any element of drying of the protein G resin will result in a detachment of the protein G from agarose beads, with significant loss in IgG yield.

Recipes

1. Neutralisation Buffer: Trizma base 1 M (pH 8.0)

   Dissolve 60.57 g of Trizma base in 400 mL of ddH₂O placed on a beaker with a magnetic stirrer.

   Adjust pH to 8.0 by adding HCl.

   Adjust the volume to 500 mL using ddH₂O.

   Store at room temperature for up to 1 year.

   
   

2. Elution Buffer: Glycine 100 mM (pH 2.3)

   Dissolve 3.785 g of glycine in 400 mL of ddH₂O placed on a beaker with on a magnetic stirrer.

   Adjust pH to 2.3 by adding HCl.

   Adjust the volume to 500 mL using ddH₂O.

   Store at 4 °C for up to 3 months.

   
   

3. Storage buffer: 20% Ethanol

   Mix 20 mL of 100% ethanol with 80 mL of ddH₂O.

   Store at 4 °C.

   
   

4. Washing buffer: Hartmann's Solution for Infusion (Compound Sodium Lactate) in Viaflo, 1,000 mL

Acknowledgments

This work was supported by grants from the Pain Relief Foundation, Liverpool, UK.

Competing interests

The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper.

Ethics

Plasma samples used for IgG purification were obtained after plasma exchange therapy (PTE) and no ethics approval was required for the use of waste plasma (15/NW/0467, North West – Haydock Research Ethics Committee).

Sera samples used for IgG purification were obatined under ethical permission and individual consent for autoantibody research (12/EE/0164, East of England).

References

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