Chiara Ambrogio University of Turin
35 protocols

Emilia Krypotou Yale University
13 protocols

Prashanth Suravajhala Department of Biotechnology and Bioinformatics, Birla Institute of Scientific Research, India
19 protocols

Reviewer
Mostafa Rahnama
  • Post-Doc, University of Kentucky
Research focus
  • Microbiology
  • Chromosomal rearrangements
    Bioinformatics
    Plant-Microbe Interaction

Education

PhD, University of Auckland, 2017

Lab information

Mark Farman Lab,
Department of Plant Pathology,
University of Kentucky

Publications

Rahnama M., Novikova O., Starnes J., Chen L., Zhang S., Farman M. 2020. Transposon-mediated telomere destabilization: a driver of genome evolution in the blast fungus. Nucleic Acids Research. https://doi:10.1093/nar/gkaa287

Rahnama M., Phillips TD, Farman ML. 2020. First report of blast disease on Eragrostis tef in the United States. Plant Disease. https://doi:10.1094/PDIS-02-20-0255-PDN

Rahnama, M., Forester, N., Ariyawansa, K.G.S.U., Voisey, C.R., Johnson, L.J., Johnson, R.D., and Fleetwood, D.J. 2017. Efficient targeted mutagenesis in Epichloë festucae using a split marker system. Journal of Microbiological Methods 134: 62–65. https://doi.org/10.1016/j.mimet.2016.12.017

Rahnama, M., Johnson, R.D., Voisey, C.R., Simpson, W.R., Fleetwood, D.J. 2018. The global regulatory protein VelA is a key regulator in the symbiosis between the endophytic fungus Epichloë festucae and Lolium perenne. Molecular Plant-Microbe Interactions. 31(6):591-604. https://doi.org/10.1094/MPMI-11-17-0286-R

Rahnama, M., Maclean, P., Fleetwood, D.J., Johnson, R.D. 2019. Comparative transcriptomics analysis of compatible wild type and incompatible ΔlaeA mutant strains of Epichloë festucae in association with perennial ryegrass. Data in Brief. 24:103843. https://doi.org/10.1016/j.dib.2019.103843.

Rahnama, M., Maclean, P., Fleetwood, D.J., Johnson, R.D. 2019. The LaeA orthologue in Epichloë festucae is required for symbiotic interaction with Lolium perenne. Fungal Genetics and Biology. 129: 74-85. https://doi.org/10.1016/j.fgb.2019.05.001.

Rahnama, M., Fields, K.A. 2018. Transformation of chlamydia: Current approaches and impact on our understanding of chlamydial infection biology. Microbes and Infection. S1286-4579. https://doi.org/10.1016/j.micinf.2018.01.002

Rahnama, M., Maclean, P., Fleetwood, D.J., Johnson, R.D. 2020. VelA and LaeA are key regulators of the Epichloë festucae transcriptomic response during symbiosis with perennial ryegrass. Microorganisms. 8(1): 33. https://doi.org/10.3390/microorganisms8010033

Wolf K., Rahnama M., Fields K.A. 2019. Genetic Manipulation of Chlamydia trachomatis: Chromosomal Deletions. In: Brown A. (eds) Chlamydia trachomatis. Methods in Molecular Biology, vol 2042. Humana, New York, NY. https://doi.org/10.1007/978-1-4939-9694-0_11
2 Protocols reviewed
EmPC-seq: Accurate RNA-sequencing and Bioinformatics Platform to Map RNA Polymerases and Remove Background Error

Transcription errors can substantially affect metabolic processes in organisms by altering the epigenome and causing misincorporations in mRNA, which is translated into aberrant mutant proteins. Moreover, within eukaryotic genomes there are specific

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NMR waterLOGSY as An Assay in Drug Development Programmes for Detecting Protein-Ligand Interactions–NMR waterLOGSY
Authors:  Carole J. R. Bataille, Terence H. Rabbitts and Timothy D. W. Claridge, date: 07/05/2020, view: 1661, Q&A: 0
In drug development programmes, multiple assays are needed for the determination of protein-compound interactions and evaluation of potential use in assays with protein-protein interactions. In this protocol we describe the waterLOGSY NMR method for ...
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