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Coauthors
Wenye Wu 1 protocol

Songxiao Zhong 1 protocol

Ziwei Li 1 protocol

Binglian Zheng
  • Faculty, Fudan University
Research focus
  • Biochemistry
  • Small RNAs and plant reproductive development
  • 1 Author merit

Education

Ph.D, Chinese Academy of Sciences, China, 2006

Lab information

Binglian Zheng's lab

Publications

1. Cheng J, Zhang Y, Li Z, Wang T, Zhang X, Zheng B* (2017). A lariat-derived circular RNA is required for plant development in Arabidopsis. Sci China Life Sci 61:204-213.
2. Li L, Wu W, Zhao Y, Zheng B* (2017). A reciprocal inhibition between ARID1 and MET1 in male and female gametes in Arabidopsis. J Integr Plant Biol 59:657-668.
3. Su C, Li Z, Cheng J, Li L, Zhong S, Liu L, Zheng Y., Zheng B* (2017). The protein phosphatase 4 and SMEK1 complex dephosphorylates HYL1 to promote miRNA biogenesis by antagonizing the MAPK cascade in Arabidopsis. Dev Cell 41:527-539.
4. Li Z, Wang S, Cheng J, Su C, Zhong S, Liu Q, Fang Y, Yu Y, Lv H, Zheng Y*, and Zheng B* (2016). Intron lariat RNA inhibits microRNA biogenesis by sequestering the dicing complex in arabidopsis. PLoS Genet: e1006422.
5. Huang Z, Shi T, Zheng B, Yumul RE, Liu X, You C, Gao Z, Xiao L, and Chen X* (2016). APETALA2 antagonizes the transcriptional activity of AGAMOUS in regulating floral stem cells in Arabidopsis thaliana. New Phytol 215:1197-1209.
6. He H, Yang T, Wu W, and Zheng B* (2015). Small RNAs in pollen. Sci China Life Sci 58:246-252.
7. Li S, Vandivier LE, Tu B, Gao L, Won SY, Li S, Zheng B, Gregory BD, and Chen X* (2015). Detection of Pol IV/RDR2-dependent transcripts at the genomic scale in Arabidopsis reveals features and regulation of siRNA biogenesis. Genome Res 25: 235-45.
8. Zheng B, He H, Zheng Y, Wu W, and McCormick S* (2014). An ARID Domain-Containing protein within nuclear bodies is required for sperm cell formation in Arabidopsis thaliana. PLoS Genet: e41004421.
9. Scarpina R, Sigaut L, Pietrasant L, McCormick S, Zheng B*, and Muschiettia J* (2013). Cajal bodies are developmentally regulated during pollen development and pollen tube growth in Arabidopsis thaliana. Mol Plant 6:1355-1357.
10. Dinh TT, O’Leary M, Won SY, Li S, Arroyo L, Liu X, Defries A, Zheng B, Cutler S, and Chen X* (2013). Generation of a luciferase-based reporter for CHH and CG DNA methylation in Arabidopsis thaliana. Silence 4:1.
11. Won SY, Li S, Zheng B, Zhao Y, Li D, Zhao X, Yi H, Gao L, Dinh TT, and Chen X* (2012). Development of a luciferase-based reporter of transcriptional gene silencing that enables bidirectional mutant screening in Arabidopsis thaliana. Silence 3:6.
12. Zheng B, Chen X, and McCormick S* (2011). The Anaphase-Promoting Complex is a dual integrator that regulates both miRNA-mediated transcriptional regulation of Cyclin B1 and degradation of Cyclin B1 during Arabidopsis male gametophyte development. Plant Cell 23:1033-1046.
13. Ji L, Liu X, Yan J, Wang W, Yumul RE., Kim YJ, Dinh TT, Liu J, Cui X, Zheng B, Agarwal M, Liu C, Cao X, Tang G, and Chen X* (2011). ARGONAUTE10 and ARGONAUTE1 regulate the termination of floral stem cells through two microRNAs in Arabidopsis. PLoS Genet 7:e1001358.
14. Zheng B and Chen X* (2011). Dynamics of histone H3 lysine 27 trimethylation in Plant development. Curr Opin Plant Biol 14:123-129.
15. Kim YJ, Zheng B, Yu Y, Wong SY, Mo B, and Chen X* (2011). The role of Mediator in small and long noncoding RNA production in Arabidopsis thaliana. EMBO J 30:814-22.
16. Deng Y, Dong H, Mu J, Ren B, Zheng B, Ji Z, Yang WC, Liang Y, and Zuo J* (2010). Arabidopsis histidine kinase CKI1 acts upstream of histidine phosphotransfer proteins to regulate female gametophyte development and vegetative growth. Plant Cell 22:1232-1248.
17. Zheng B, Wang Z, Li S, Yu B, Liu J, and Chen X* (2009). Intergenic transcription by RNA polymerase II coordinates PolIV and PolV in siRNA-directed transcriptional gene silencing in Arabidopsis. Gene Dev 23: 2850-2860.
18. Song D, Yang Y, Yu B, Zheng B, Deng Z, Lu BL, Chen X, and Jiang T* (2009). Computational prediction of novel non-coding RNAs in Arabidopsis thaliana. BMC Bioinformatics 10: S36.
19. Yu B, Bi L, Zheng B, Ji L, Chevalier D, Agarwal M, Ramachandran V, Li W, Lagrange T, Walker JC, and Chen X* (2008). The FHA domain proteins DAWDLE in Arabidopsis and SNIP1 in humans act in small RNA biogenesis. Proc Natl Acad Sci USA 105: 10073-10078.
20. Zheng B†, Deng Y†, Mu J, Ji Z, Xiang T, Niu Q-W, Chua N-H, and Zuo J,* (2006). Cytokinin affects circadian-clock oscillation in a phytochrome B- andArabidopsis response regulator 4-dependent manner Physiologia Plantarum 127: 277–292.
21. Liu K, Zheng B, Hong H*, Jiang C, Peng R, Peng J, Yu Z, Zheng J, and Yang H (2004). Characterization of cultured insect cells selected by Bacillus thuringiensis crystal toxin. In Vitro Cell Dev Biol Anim 40:312-317.
22. Sun J, Niu QW, Tarkowski P, Zheng B, Tarkowska D, Sandberg G, Chua NH, and Zuo J* (2003). The Arabidopsis AtIPT8/PGA22 gene encodes an isopentenyl transferase that is involved in de novo cytokinin biosynthesis. Plant Physiol 131:167-176.
1 Protocol published
RNA Immunoprecipitation (RIP) Sequencing of Pri-miRNAs Associated with the Dicing Complex in Arabidopsis
Authors:  Ziwei Li, Songxiao Zhong, Wenye Wu and Binglian Zheng, date: 07/05/2018, view: 344, Q&A: 0
RNA immunoprecipitation (RIP) is an antibody-based technique used to map in vivo RNA-protein interactions. DBR1, an RNA debranching enzyme, is responsible for the debranching of lariat RNA, for the degradation and turnover of lariat RNAs. ...