Anand Patwardhan University of California, San Diego
3 protocols

Manoj B. Menon Indian Institute of Technology Delhi
1 protocol

Vaibhav Shah The University of New South Wales
16 protocols

Vamseedhar Rayaprolu La Jolla Institute for Allergy and Immunology
24 protocols

Reviewer
Saumik Basu
  • Post-Doc, Washington State University
Research focus
  • Plant science
  • Plant-insect-virus interactions

Education

PhD, JAWAHARLAL NEHRU UNIVERSITY, 2014

Publications

1. Basu S, Pereira AE, Pinheiro DH, Wang H, Siegfried BD, Louis J, Vélez AM (2019). Evaluation of reference genes for expression analysis using quantitative real-time PCR in southern corn rootworm, Diabrotica undecimpunctata howardi (Barber). Scientific Reports. PMID: 31341190. DOI:10.1038/s41598-019-47020-y.

2. Palmer NA, Basu S, Heng-Moss T, Bradshaw JD, Sarath S, Louis J (2019). Fall armyworm (Spodoptera frugiperda Smith) feeding elicits differential defense responses in upland and lowland switchgrass. PLoS ONE. PMID: 31194847. DOI: 10.1371/journal.pone.0218352.

3. Clark RE*, Basu S, Lee BW, Crowder DW. (2019). Tri-trophic interactions and non-vector herbivores determine the spread of vector-borne pathogens through trait- and density-mediated mechanisms. Ecology. PMID: 31482568. DOI: 10.1002/ecy.2879.

4. Basu S, Kumar Kushwaha N, Kumar Singh A, Pankaj Sahu P, Vinoth Kumar R, Chakraborty S. (2018). Dynamics of a geminivirus encoded pre-coat protein and host RNA- dependent RNA polymerase 1 in regulating symptom recovery in tobacco. J Exp Bot. PMID: 29432546 DOI: 10.1093/jxb/ery043.

5. Basu S, Varsani S, Louis J. (2018). Altering Plant Defenses: Herbivore-Associated Molecular Patterns and Effector Arsenal of Chewing Herbivores. Mol Plant Microbe Interact. PMID: 28840787. DOI: 10.1094/MPMI-07-17-0183-FI. Epub 2017 Oct 12.

6. Ray S, Basu S, Rivera-Vega LJ, Acevedo FE, Louis J, Felton GW, Luthe DS. (2016). Lessons from the Far End: Caterpillar FRASS-Induced Defenses in Maize, Rice, Cabbage, and Tomato. J Chem Ecol. PMID: 27704315 DOI: 10.1007/s10886-016-0776-x.

7. Varsani S, Basu S, Williams WP, Felton GW, Luthe DS, Louis J. (2016). Intraplant communication in maize contributes to defense against insects. Plant Signal Behav. PMID: 27467304 DOI: 10.1080/15592324.2016.1212800.

8. Louis J, Basu S, Varsani S, Castano-Duque L, Jiang V, Wiiliams WP, Felton GW, Luthe DS. (2015) Ethylene contributes to mir1-mediated maize defense against the phloem-sap sucking corn leaf aphid. Plant Physiol. PMID: 26253737 DOI: 10.1104/pp.15.00958.

9. Kumar RV, Singh AK, Singh AK, Yadav T, Basu S, Kushwaha N, Chattopadhyay B, Chakraborty S. (2015). Complexity of begomovirus and betasatellite populations associated with chilli leaf curl disease in India. J Gen Virol. PMID: 26251220 DOI: 10.1099/jgv.0.000254.

10. Sharma VK, Basu S, Chakraborty S. (2015). RNAi mediated broad-spectrum transgenic resistance in Nicotiana benthamiana to chilli-infecting begomoviruses. Plant Cell Rep. PMID: 25916177 DOI: 10.1007/s00299-015-1795-8.

11. Kushwaha N, Singh AK, Basu S, Chakraborty S. (2015). Differential response of diverse solanaceous hosts to tomato leaf curl New Delhi virus infection indicates coordinated action of NBS-LRR and RNAi-mediated host defense. Arch Virol. PMID: 25894479 DOI: 10.1007/s00705-015-2399-x.

12. Sharma VK, Kushwaha N, Basu S, Singh AK, Chakraborty S. (2015). Identification of siRNA generating hot spots in multiple viral suppressors to generate broad-spectrum antiviral resistance in plants. Physiol Mol Biol Plants. PMID: 25648440 DOI: 10.1007/s12298-014-0264-0.

13. Ranjan P, Singh AK, Kumar RV, Basu S, Chakraborty S. (2014). Host-specific adaptation of diverse betasatellites associated with distinct Indian tomato-infecting begomoviruses. Virus Genes. PMID: 24384936 DOI: 10.1007/s11262-013-1031-y.

14. Chisholm PJ, Eigenbrode SD, Clark RE, Basu S, Crowder DW. (2019).
Plant-mediated indirect interactions between a vector and a non-vector herbivore promotes the spread of a plant virus Proceedings of Royal society B (Accepted).

MANUSCRIPTS UNDER PREPARATION
 Basu S, Clark RE, Fu Z, Crowder DW. Insect alarm pheromones in response to predators: molecular mechanisms and ecological trade-offs in food web interactions (In preparation).

 Basu S, Jiménez AV, Neetha V, Velez AM, Louis J. Detection of β-glucosidase activity in Diabrotica virgifera virgifera and effect of Glycoside hydrolase I mediated RNAi on β-glucosidase activity. (In preparation for Scientific Reports)

 Basu S, Varsani S, Louis J. Jasmonic acid contributes to PAD4 mediated defense in Arabidopsis against the chewing herbivore Cabbage loppers (In preparation).

 Basu S*, Lee BW*, Clark RE, Crowder DW. Predation risk and conspecific alarm cues affect pea aphid vector competence for Pea enation mosaic virus during complex multitrophic interactions (In preparation for Journal of Chemical Ecology).

 Basu S, Malhotra P, Crowder DW, Casteel CL. Diversity of viral suppressors in tomato infecting viruses: Structural and functional analysis of counter-defense and pathogenicity in tomato (in preparation).

 Basu S, Clark RE, Casteel CL, Crowder DW. Assessing the role of chemical defense and plant nutrients in mediating plant-insect-pathogen interactions (In preparation for molecular ecology).

 Basu S, Clark RE, Lee BW, Casteel CL, Crowder DW. Reciprocal antagonism between a plant virus and rhizobial bacteria in a legume crop (In preparation).

BOOK CHAPTER
 Basu S, Sharma VK, Bhattacharyya D, Chakraborty S. (2014) An overview of antiviral
RNA silencing in plant: biogenesis, host-virus interaction and potential applications.
"Approaches to Plant Stress and their Management". Springer Verlag publishers. DOI
10.1007/978-81-322-1620-9_18.
3 Protocols reviewed
Cell Type-specific mRNA Purification in Caenorhabditis elegans via Translating Ribosome Affinity Purification
Authors:  Ian G. McLachlan and Steven W. Flavell, date: 08/05/2019, view: 504, Q&A: 0
Cell type-specific molecular profiling is widely used to gain new insights into the diverse cell types that make up complex biological tissues. Translating ribosome affinity purification (TRAP) is a method in which the cell type-specific expression ...
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Filter Retardation Assay for Detecting and Quantifying Polyglutamine Aggregates Using Caenorhabditis elegans Lysates
Authors:  Olga Sin, Alejandro Mata-Cabana, Renée I. Seinstra and Ellen A. A. Nollen, date: 10/05/2018, view: 2628, Q&A: 0
Protein aggregation is a hallmark of several neurodegenerative diseases and is associated with impaired protein homeostasis. This imbalance is caused by the loss of the protein’s native conformation, which ultimately results in its aggregation or ...
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