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Coauthors
Jack Waters Allen Institute for Brain Science, United States, United States,
1 protocol

Marc Takeno Allen Institute for Brain Science, United States, United States,
1 protocol

Quanxin Wang Allen Institute for Brain Science, United States, United States,
1 protocol

Jun Zhuang
  • Allen Institute for Brain Science, United States, United States,
  • 1 Author merit

Education

PhD, University of Connecticut, USA

Current position

Scientist II, Neural Coding, Allen Institute.for Brain Science, USA

Publications

  1. Steinmetz, N. A., Buetfering, C., Lecoq, J., Lee, C. R., Peters, A. J., Jacobs, E. A. K., Coen, P., Ollerenshaw, D. R., Valley, M. T., de Vries, S. E. J., Garrett, M., Zhuang, J., Groblewski, P. A., Manavi, S., Miles, J., White, C., Lee, E., Griffin, F., Larkin, J. D., Roll, K., Cross, S., Nguyen, T. V., Larsen, R., Pendergraft, J., Daigle, T., Tasic, B., Thompson, C. L., Waters, J., Olsen, S., Margolis, D. J., Zeng, H., Hausser, M., Carandini, M. and Harris, K. D. (2017). Aberrant Cortical Activity in Multiple GCaMP6-Expressing Transgenic Mouse Lines. eNeuro 4(5).
  2. Zhuang, J., Ng, L., Williams, D., Valley, M., Li, Y., Garrett, M. and Waters, J. (2017). An extended retinotopic map of mouse cortex. Elife 6.
  3. Juavinett, A. L., Nauhaus, I., Garrett, M. E., Zhuang, J. and Callaway, E. M. (2017). Automated identification of mouse visual areas with intrinsic signal imaging. Nat Protoc 12(1): 32-43.
  4. Hawrylycz, M., Anastassiou, C., Arkhipov, A., Berg, J., Buice, M., Cain, N., Gouwens, N. W., Gratiy, S., Iyer, R., Lee, J. H., Mihalas, S., Mitelut, C., Olsen, S., Reid, R. C., Teeter, C., de Vries, S., Waters, J., Zeng, H., Koch, C. and MindScope (2016). Inferring cortical function in the mouse visual system through large-scale systems neuroscience. Proc Natl Acad Sci U S A 113(27): 7337-7344.
  5. Stoelzel, C. R., Huff, J. M., Bereshpolova, Y., Zhuang, J., Hei, X., Alonso, J. M. and Swadlow, H. A. (2015). Hour-long adaptation in the awake early visual system. J Neurophysiol 114(2): 1172-1182.
  6. Hei, X., Stoelzel, C. R., Zhuang, J., Bereshpolova, Y., Huff, J. M., Alonso, J. M. and Swadlow, H. A. (2014). Directional selective neurons in the awake LGN: response properties and modulation by brain state. J Neurophysiol 112(2): 362-373.
  7. Zhuang, J., Bereshpolova, Y., Stoelzel, C. R., Huff, J. M., Hei, X., Alonso, J. M. and Swadlow, H. A. (2014). Brain state effects on layer 4 of the awake visual cortex. J Neurosci 34(11): 3888-3900.
  8. Zhuang, J., Stoelzel, C. R., Bereshpolova, Y., Huff, J. M., Hei, X., Alonso, J. M. and Swadlow, H. A. (2013). Layer 4 in primary visual cortex of the awake rabbit: contrasting properties of simple cells and putative feedforward inhibitory interneurons. J Neurosci 33(28): 11372-11389.
  9. Bereshpolova, Y., Stoelzel, C. R., Zhuang, J., Amitai, Y., Alonso, J. M. and Swadlow, H. A. (2011). Getting drowsy? Alert/nonalert transitions and visual thalamocortical network dynamics. J Neurosci 31(48): 17480-17487.
  10. Liu, Y. J., Zhuang, J., Zhu, H. Y., Shen, Y. X., Tan, Z. L. and Zhou, J. N. (2007). Cultured rat cortical astrocytes synthesize melatonin: absence of a diurnal rhythm. J Pineal Res 43(3): 232-238.
1 Protocol published
Registration and Alignment Between in vivo Functional and Cytoarchitectonic Maps of Mouse Visual Cortex
Authors:  Jun Zhuang, Quanxin Wang, Marc Takeno and Jack Waters, date: 02/20/2018, view: 26, Q&A: 0
This protocol describes a method for registration of in vivo cortical retinotopic map with cytochrome c oxidase (CO) labeled architectonic maps of the same mouse brain through the alignment of vascular fiducials. By recording surface blood ...