Alexandros Alexandratos National and Kapodistrian University of Athens
38 protocols

Alka Mehra Institute of Genomics and Integrative Biology
36 protocols

Arsalan Daudi University of California
157 protocols

Aswad Khadilkar UNIVERSITY OF CALIFORNIA SANTA CRUZ
11 protocols

Editor
Prashanth N Suravajhala
  • Research scientist, Department of Biotechnology and Bioinformatics, Birla Institute of Scientific Research, India
Research focus
  • Systems biology
  • Systems Biology, Next Generation Sequencing, Functional Genomics, non-coding RNA
  • 4 Author merit

Education

PhD, Aalborg University

Lab information

Department of Biotechnology and Bioinformatics, Birla Institute of Scientific Research, Statue Circle, Jaipur 302001 RJ, India
http://bisr.res.in/profile_prash.php

Publications

4 Protocols published
A Bioinformatics Pipeline for Whole Exome Sequencing: Overview of the Processing and Steps from Raw Data to Downstream Analysis
Authors:  Narendra Meena, Praveen Mathur, Krishna Mohan Medicherla and Prashanth Suravajhala, date: 04/20/2018, view: 21877, Q&A: 0
Recent advances in Next Generation Sequencing (NGS) technologies have given an impetus to find causality for rare genetic disorders. Since 2005 and aftermath of the human genome project, efforts have been made to understand the rare variants of ...
11 Protocols reviewed
Understanding Docking Complexes of Macromolecules Using HADDOCK: The Synergy between Experimental Data and Computations
Authors:  Andrea Saponaro, Vincenzo Maione, Alexandre M. J. J. Bonvin and Francesca Cantini, date: 10/20/2020, view: 147, Q&A: 0
This protocol illustrates the modelling of a protein-peptide complex using the synergic combination of in silico analysis and experimental results. To this end, we use the integrative modelling software HADDOCK, which possesses the powerful ...
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ChIP-Seq from Limited Starting Material of K562 Cells and Drosophila Neuroblasts Using Tagmentation Assisted Fragmentation Approach
Authors:  Junaid Akhtar, Piyush More and Steffen Albrecht, date: 02/20/2020, view: 1174, Q&A: 0
Chromatin immunoprecipitation is extensively used to investigate the epigenetic profile and transcription factor binding sites in the genome. However, when the starting material is limited, the conventional ChIP-Seq approach cannot be implemented. ...
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7 Protocols edited
BRIDGE: An Open Platform for Reproducible Protein-Ligand Simulations and Free Energy of Binding Calculations
Authors:  Tharindu Senapathi, Christopher B. Barnett and Kevin J. Naidoo, date: 09/05/2020, view: 1010, Q&A: 0
Protein-ligand binding prediction is central to the drug-discovery process. This often follows an analysis of genomics data for protein targets and then protein structure discovery. However, the complexity of performing reproducible protein ...
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HoSeIn: A Workflow for Integrating Various Homology Search Results from Metagenomic and Metatranscriptomic Sequence Datasets
Authors:  Gaston Rozadilla, Jorgelina Moreiras Clemente and Christina B. McCarthy, date: 07/20/2020, view: 602, Q&A: 0
Data generated by metagenomic and metatranscriptomic experiments is both enormous and inherently noisy. When using taxonomy-dependent alignment-based methods to classify and label reads, the first step consists in performing homology searches ...
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