Prashanth N Suravajhala

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Pradeep Bhatnagar 2 protocols

Priyanka Mathur 2 protocols

Sonal Gupta 2 protocols

Urvashi Vijay 2 protocols

Alexandros Alexandratos National and Kapodistrian University of Athens
34 protocols

Alka Mehra Institute of Genomics and Integrative Biology
36 protocols

Arsalan Daudi University of California
157 protocols

Aswad Khadilkar UNIVERSITY OF CALIFORNIA SANTA CRUZ
11 protocols

Editor

Prashanth N Suravajhala

Research scientist, Department of Biotechnology and Bioinformatics, Birla Institute of Scientific Research, India

Research focus

Systems biology
Systems Biology, Next Generation Sequencing, Functional Genomics, non-coding RNA

4 Author merit
Reviewer merit
Editor merit

Education

PhD, Aalborg University

Lab information

Department of Biotechnology and Bioinformatics, Birla Institute of Scientific Research, Statue Circle, Jaipur 302001 RJ, India
http://bisr.res.in/profile_prash.php

Publications

https://www.ncbi.nlm.nih.gov/pubmed/?term=Suravajhala+P

4 Protocols published

Correction: Microbial Mutagenicity Assay: Ames Test

Authors: Urvashi Vijay, Sonal Gupta, Priyanka Mathur, Prashanth Suravajhala and Pradeep Bhatnagar, date: 08/20/2018, view: 1961, Q&A: 0

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A Bioinformatics Pipeline for Whole Exome Sequencing: Overview of the Processing and Steps from Raw Data to Downstream Analysis

Authors: Narendra Meena, Praveen Mathur, Krishna Mohan Medicherla and Prashanth Suravajhala, date: 04/20/2018, view: 20417, Q&A: 0

Recent advances in Next Generation Sequencing (NGS) technologies have given an impetus to find causality for rare genetic disorders. Since 2005 and aftermath of the human genome project, efforts have been made to understand the rare variants of ...

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10 Protocols reviewed

ChIP-Seq from Limited Starting Material of K562 Cells and Drosophila Neuroblasts Using Tagmentation Assisted Fragmentation Approach

Authors: Junaid Akhtar, Piyush More and Steffen Albrecht, date: 02/20/2020, view: 925, Q&A: 0

Chromatin immunoprecipitation is extensively used to investigate the epigenetic profile and transcription factor binding sites in the genome. However, when the starting material is limited, the conventional ChIP-Seq approach cannot be implemented. ...

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Preparation of Sequencing RNA Libraries through Chemical Cross-linking Coupled to Affinity Purification (cCLAP) in Saccharomyces cerevisiae

Authors: Congwei Wang, Julie Weidner and Anne Spang, date: 10/05/2018, view: 3371, Q&A: 0

Ribonucleoprotein particles (mRNPs) are complexes consisting of mRNAs and RNA-binding proteins (RBPs) which control mRNA transcription localization, turnover, and translation. Some mRNAs within the mRNPs have been shown to undergo degradation or ...

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6 Protocols edited

HoSeIn: A Workflow for Integrating Various Homology Search Results from Metagenomic and Metatranscriptomic Sequence Datasets

Authors: Gaston Rozadilla, Jorgelina Moreiras Clemente and Christina B. McCarthy, date: 07/20/2020, view: 267, Q&A: 0

Data generated by metagenomic and metatranscriptomic experiments is both enormous and inherently noisy. When using taxonomy-dependent alignment-based methods to classify and label reads, the first step consists in performing homology searches ...

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Sequence Alignment Using Machine Learning for Accurate Template-based Protein Structure Prediction

Authors: Shuichiro Makigaki and Takashi Ishida, date: 05/05/2020, view: 935, Q&A: 0

Template-based modeling, the process of predicting the tertiary structure of a protein by using homologous protein structures, is useful when good templates can be available. Indeed, modern homology detection methods can find remote homologs with ...

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