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Tracking replication fork dynamics: A deep dive into scEdU-seq

Speaker: Jeroen van den Berg Moderator: Bert Jan Korte

Online live: Feb 04, 2025 11:00 AM EST Views: 4552

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Abstract

In this webinar, we explore advancements in understanding DNA replication dynamics at the single-cell level, focusing on the innovative method of single-cell 5-ethynyl-2′-deoxyuridine sequencing (scEdU-seq). DNA replication, a vital process ensuring accurate genome duplication before cell division, varies across different epigenetic states and cell types. Using scEdU-seq, researchers can now measure replication speeds with high precision and observe how these speeds fluctuate during various stages of the S phase.

Join us as we delve into the temporal variations in DNA replication speed, the role of transcription-induced DNA damage in limiting replication speed, and the implications for developmental defects and tumorigenesis. The webinar will also highlight key genetic and pharmacological perturbations that influence DNA replication, offering insights into the complex interplay between replication dynamics and genomic integrity.


Highlights:

- Introduction to scEdU-seq: A novel method for measuring DNA replication speed in single cells.

- Insights into the variability of replication speed during the S phase of the cell cycle.

- The impact of transcription-induced DNA damage on replication dynamics.

- Discussion on the acceleration of replication in the late S phase.

- Applications of genetic and pharmacological perturbations to modulate replication speed.

- Implications for understanding developmental defects and cancer development.

Speaker

Jeroen van den Berg

Jeroen van den Berg, Ph.D.

Postdoctoral Fellow, Hubrecht Institute

Dr. Jeroen van den Berg is a Postdoctoral Fellow in Dr. Alexander van Oudenaarden's lab at the Hubrecht Institute. His research focuses on developi...

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Moderator

Bert Jan Korte

Bert Jan Korte, M.Sc.

Ph.D. candidate, Hubrecht Institute

Bert Jan Korte is a PhD candidate at the Hubrecht Institute in Dr. Alexander van Oudenaarden's lab, where he focuses on Developmental Biology and S...

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Keywords

scEdU-seq, DNA replication fork dynamics, Single-cell sequencing, S phase variability, Replication speed measurement, Transcription-induced DNA damage, Genomic integrity, Epigenetic influence on replication

References

1.

van den Berg, J., van Batenburg, V., Geisenberger, C. et al. Quantifying DNA replication speeds in single cells by scEdU-seq. Nat Methods 21, 1175–1184 (2024). https://doi.org/10.1038/s41592-024-02308-4

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14 Q&A

Application of scEdU-seq in neuroscience

Has scEdU-seq been applied in neuroscience?

edit 0 Answer 6 Views Jan 17, 2025

Can this technique predict DNA replication speed in cancer cells and help in the diagnostics part of it?

Can this technique predict DNA replication speed in cancer cells and help in the diagnostics part of it?

edit 0 Answer 5 Views Jan 16, 2025

Does this method can be used in neurons?

Does this method can be used in neurons?

edit 0 Answer 5 Views Jan 15, 2025