Tracking replication fork dynamics: A deep dive into scEdU-seq
Speaker: Jeroen van den Berg Moderator: Bert Jan Korte
Online live: Feb 04, 2025 11:00 AM EST Views: 4552
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Abstract
In this webinar, we explore advancements in understanding DNA replication dynamics at the single-cell level, focusing on the innovative method of single-cell 5-ethynyl-2′-deoxyuridine sequencing (scEdU-seq). DNA replication, a vital process ensuring accurate genome duplication before cell division, varies across different epigenetic states and cell types. Using scEdU-seq, researchers can now measure replication speeds with high precision and observe how these speeds fluctuate during various stages of the S phase.
Join us as we delve into the temporal variations in DNA replication speed, the role of transcription-induced DNA damage in limiting replication speed, and the implications for developmental defects and tumorigenesis. The webinar will also highlight key genetic and pharmacological perturbations that influence DNA replication, offering insights into the complex interplay between replication dynamics and genomic integrity.
Highlights:
- Introduction to scEdU-seq: A novel method for measuring DNA replication speed in single cells.
- Insights into the variability of replication speed during the S phase of the cell cycle.
- The impact of transcription-induced DNA damage on replication dynamics.
- Discussion on the acceleration of replication in the late S phase.
- Applications of genetic and pharmacological perturbations to modulate replication speed.
- Implications for understanding developmental defects and cancer development.
Speaker
Jeroen van den Berg, Ph.D.
Postdoctoral Fellow, Hubrecht Institute
Dr. Jeroen van den Berg is a Postdoctoral Fellow in Dr. Alexander van Oudenaarden's lab at the Hubrecht Institute. His research focuses on developi...
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Moderator
Bert Jan Korte, M.Sc.
Ph.D. candidate, Hubrecht Institute
Bert Jan Korte is a PhD candidate at the Hubrecht Institute in Dr. Alexander van Oudenaarden's lab, where he focuses on Developmental Biology and S...
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Keywords
scEdU-seq, DNA replication fork dynamics, Single-cell sequencing, S phase variability, Replication speed measurement, Transcription-induced DNA damage, Genomic integrity, Epigenetic influence on replication
References
van den Berg, J., van Batenburg, V., Geisenberger, C. et al. Quantifying DNA replication speeds in single cells by scEdU-seq. Nat Methods 21, 1175–1184 (2024). https://doi.org/10.1038/s41592-024-02308-4
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