Improve Research Reproducibility A Bio-protocol resource

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Speaker: Saba Parvez Moderator: Renate Weizbauer Live Chat: Ben Langmead

Online live: Apr 13, 2023 12:00 AM ET | 9:00 PM PT Views: 14

Q&A Q&A

Abstract

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The characterization of native protein assemblies requires the production of a relatively pure sample that maintains the full complement, native organization, and function of that complex. This can be particularly challenging to achieve for large, multi-component, membrane embedded complexes using the traditional recombinant expression and reconstitution methodologies. However, using affinity capture from native cells, suitable whole endogenous protein complexes can be isolated. In this webinar, I will present a method for the affinity isolation and characterization of baker's yeast (S. cerevisiae) nuclear pore complexes, which are ~50 MDa assemblies made up of 552 distinct proteins and embedded in a double-membraned nuclear envelope. Producing this sample allowed us to perform analyses to characterize the mass, stoichiometry, morphology, and connectivity of this complex and to obtain its integrative structure with subnanometer precision. We believe this methodology can be applied to other challenging protein complexes to produce similar results.


The speakers will discuss:

a) Affinity purification of large, native macromolecular assemblies

b) Integrative structural characterization of the nuclear pore complex

Speaker

Saba Parvez

Saba Parvez, Ph.D.

Postdoctoral fellow, Department of Pharmacology & Toxicology, University of Utah, Salt Lake City, UT

Saba Parvez is a postdoctoral fellow in Dr. Randy Peterson’s laboratory at the University of Utah. Saba received his PhD in Chemistry and Chemical ...

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Moderator

Renate Weizbauer

Renate Weizbauer, Ph.D.

Post-Doc, Carnegie Institution for Science

I am a plant cell and molecular biologist, working on understanding how the cell assembles and modifies the wall matrix that surrounds it, using th...

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Live Chat

Ben Langmead

Ben Langmead, Ph.D.

Associate Professor, John Hopkins Universtity

Ben Langmead is an Associate Professor of Computer Science at Johns Hopkins University. He earned a Ph.D. in Computer Science from the University o...

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Keywords

DNA

References

1.

Nudelman I, Fernandez-Martinez J, Rout MP. “Affinity Isolation of Endogenous Saccharomyces Cerevisiae Nuclear Pore Complexes”. Methods Mol Biol. 2022; 2502:3-34. doi: 10.1007/978-1-0716-2337-4_1.

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1 Q&A

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edit 0 Answer 2 Views Oct 30, 2025