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Experimental methods for identifying synergistic nanobody combinations that neutralize SARS-CoV-2

Speaker: Fred D. Mast Moderator: Peter C. Fridy Live Chat: Natalia Ketaren

Online live: Oct 19, 2022 12:00 PM EST Views: 2279

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Abstract

The COVID-19 pandemic has underscored the need for superior, highly effective and variant-resistant therapeutics against emerging viral pathogens. Nanobodies, recombinantly expressed fragments of antibodies produced by llamas and other members of the camelid family, are an exciting candidate for therapeutic development. They are ten times smaller than human antibodies, remarkably robust, and can be readily “humanized” for use in diagnostic and therapeutic treatments. Nanobodies can bind to viral antigens in places not accessible to human antibodies and are considerably more thermo-resistant. We have generated a repertoire containing >100 nanobodies against the spike protein of SARS-CoV-2. From this repertoire, we have identified distinct nanobody classes that have exceptional biophysical characteristics and unique and orthogonal mechanisms for neutralizing SARS-CoV-2. In this webinar, we will discuss the advantages of nanobodies and our methods to characterize their neutralizing activity, including use of liquid-handling robots and methods to readout neutralization efficacy. Using these methods we have identified several nanobody combinations that display drug-like synergy, enhancing neutralizing activity far greater than expected by additive activity alone. These results offer insights into optimal design principles for developing highly effective and variant-resistant COVID-19 therapeutics.


The speakers will discuss:

a) Nanobodies are effective variant-resistant neutralizers of SARS-CoV-2

b) Combinations of nanobodies with orthogonal mechanisms of neutralization are highly synergistic in neutralization activity

c) Automation of liquid handling improves assay development and experimental results

Speaker

Fred D. Mast

Fred D. Mast, Ph.D.

Senior Research Scientist, Seattle Children’s Research Institute

Fred Mast is a Senior Research Scientist in the Center for Global Infectious Disease Research at Seattle Children’s Research Institute. Dr. Mast re...

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Moderator

Peter C. Fridy

Peter C. Fridy, Ph.D.

Research Associate, The Rockefeller University

Peter Fridy is a Research Associate in the Laboratory of Cellular and Structural Biology (Prof. Michael P. Rout) at The Rockefeller University, whe...

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Live Chat

Natalia Ketaren

Natalia Ketaren, Ph.D.

Research Associate, The Rockefeller University

Natalia Ketaren in a Research Associate in the Laboratory of Cellular and Structural Biology (Prof. Michael P. Rout) at The Rockefeller University....

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Keywords

Nanobodies, Neutralization assays, Automation, SARS-CoV-2

References

1.
Mast FD, Fridy PC, Ketaren NE, Wang J, Jacobs EY, Olivier JP, Sanyal T, Molloy KR, Schmidt F, Rutkowska M, Weisblum Y, Rich LM, Vanderwall ER, Dambrauskas N, Vigdorovich V, Keegan S, Jiler JB, Stein ME, Olinares PDB, Herlands L, Hatziioannou T, Sather DN, Debley JS, Fenyö D, Sali A, Bieniasz PD, Aitchison JD, Chait BT, Rout MP. Highly synergistic combinations of nanobodies that target SARS-CoV-2 and are resistant to escape. Elife. 2021 Dec 7;10:e73027. doi: 10.7554/eLife.73027. PMID: 34874007; PMCID: PMC8651292.

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24 Q&A

Is this project considering exploring inhaled nanobody combination formulations?

Inhaled treatment and immune-modulation options for respiratory infections show distinct promise yet remain under-explored

Ruan Jianguo
Ms
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edit 2 Answers 64 Views Oct 12, 2022
JL John LaCava

Here is a publication on that subject: https://www.science.org/doi/10.1126/sciadv.abh0319

helpful 3 helpful
PF Peter Fridy

Yes, this is absolutely being explored. Nanobodies are great candidates for intranasal treatment as they are more stable to nebulization than standard antibodies.

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How much more efficient of these chemical-engineered nanobody antibodies than naturally existing antibodies?

The natural existing antibodies have memory and give pro-long protectivity against a specific antigen. In that terms how are these engineered nanaobody antibodies more efficient in protection? Does the provide memory against the same antigen in a future gain?

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JZ
Pv
GV
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edit 1 Answer 46 Views Oct 12, 2022
PF Peter Fridy

Nanobodies are essentially high-performance natural antibodies selected from an immunized llama, so they would have the same basic properties as a given naturally occurring antibody. They will continue to be reactive against their original antigen or closely related variants.

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Do functional groups of amino acid residues in the polypeptide structure of SARS-CoV-2 influence neutralizing?

Do functional groups of amino acid residues in the polypeptide structure of SARS-CoV-2 influence neutralizing nanobodies?

JR
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edit 1 Answer 35 Views Oct 14, 2022
PF Peter Fridy

Yes, certain amino acid functional groups within a nanobody's epitope are important for binding and neutralization. Mutations in SARS-CoV-2 spike can therefore reduce or eliminate neutralization of some antibodies, including nanobodies. But we have identified nanobodies resistant to common mutations.

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Greetings! In your email: “Automation of liquid handling improves assay development and experimental results…?

Will you be sharing your methodology behind your automation of liquid handling in the talk?


My PI: Dr. Ken Dawson Scully:

http://biology.fau.edu/directory/dawson-scully/index.php



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AA
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edit 1 Answer 33 Views Oct 12, 2022
Fred D. Mast Fred D. Mast

Hi David, Thanks for your question. Yes, we will cover our automated liquid handling procedures in the webinar.

Cheers,

Fred

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Thank you so much for arranging this webinar. I would like ask this nanobody have been used for treatment already?

Thank you so much.

edit 1 Answer 32 Views Oct 12, 2022
Fred D. Mast Fred D. Mast

Hi Shahram, Thanks for your interest in this webinar. Our nanobodies are in preclinical development.

Cheers,

Fred

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What's the difference between nanobodies and conventional monoclonal antibodies?

Clarification of the concept or the premise behind nanobodies obtention.

MB
MA
MK
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edit 1 Answer 25 Views Oct 12, 2022
Fred D. Mast Fred D. Mast

Hi Javier, thanks for your question. Nanobodies are ~1/10th the size of conventional monoclonal antibodies, they have a small, flexible paratope (antigen binding site), and lack a light chain. These features makes nanobodies extremely soluble and stable, simple to manufacture and store, and amenable to modifications, e.g., oligomerization.

We will cover the benefits of nanobodies and the differences between nanobodies and conventional monoclonal antibodies in the webinar.

Cheers,

Fred

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are we going to talk about neutralization?

I meant neutralization using pseudotype viruses.

edit 1 Answer 14 Views Oct 12, 2022
Fred D. Mast Fred D. Mast

Hi Alexandra, Thanks for your interest in the webinar. Yes, we will cover neutralization of spike-pseudotyped viruses and also of real SARS-CoV-2.

Cheers,

Fred

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How effective the antibody neutralization quantification method?

Does the nanobodies compatible with mouse models?

GV
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edit 0 Answer 9 Views Oct 12, 2022

How is the half-life of monovalent nabodies compared to that of full monoclonal antibodies when used in vivo? Can that strategy be applied to Fab-s?

It is mi understanding that in the case of monoclonal antibodies the Fc domain enables higher half-life values in vivo. As the nanobodies are used without the Fc domain, how are they engineered to maintain half-lifes high enough to be used as therapeutic agents? And could that strategy be applied also to Fab-s?

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edit 0 Answer 9 Views Oct 15, 2022

Define nanobody. How is it different from others ?

Define nanobody. How is it different from others ?

GV
KB
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edit 1 Answer 20 Views Oct 11, 2022
BA BP-Exchange Assistant

Nanobodies are based on the variable domain of the camelid antibodies which, unlike the common antibody, are comprised only of the heavy chain. This makes them quite a bit smaller (15 kda) than their parental full length antibodies, or antibodies derived from chicken, rabbit or humans. They also do not require to be assembled from fragments of the heavy AND light chains such as the other antibody fragments, e.g Fabs or scFvs.


see also the answer of the speaker to a related question below:

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What is synergistic nanobodies in simple term?

What is synergistic nanobodies in simple term?

edit 1 Answer 9 Views Oct 19, 2022
Fred D. Mast Fred D. Mast

We define synergistic nanobodies as those which confer greater than additive activity (in this case, the neutralization of spike) when combined together versus when provided as monomers alone.


You can read more about this in our manuscript.

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could you please tell us about the biochemistry of nanobodies and their production process?

could you please tell us about the biochemistry of nanobodies and their production process?

edit 0 Answer 5 Views Oct 12, 2022

What is the Development Direction of Nanobody?

Specific application prospects of nanobodies.

edit 0 Answer 4 Views Oct 12, 2022

development of multivalent nanobodies to vaccinate livestock against viral diseases?

Like Civid 19 and SARS, Lympy skin disease is getting emerging as an epidemic. So devel;oping novel vaccination strategy to control the disease by vaccination. There is aacute need to develop a modern vaccine to vaccinate the livestock.

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Pv
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edit 0 Answer 8 Views Oct 12, 2022

To what extent is it possible for all mutations of COVID-19 to be neutralised?

Can COVID be eradicated, or will it continue to mutate? 


edit 0 Answer 4 Views Oct 13, 2022

Has nanobody been implicated in any autoimmunedisease?

Considering the fact that autoantibody cause autoimmune disease, is there any reported incidence where nanobody is detected in autoimmune disease.


edit 0 Answer 8 Views Oct 13, 2022

What are various uses of nanotechnology in agriculture?

What are various uses of nanotechnology in agriculture?

edit 1 Answer 18 Views Oct 12, 2022
BA BP-Exchange Assistant

That's an excellent question! Nanotechnology is a broad field, so let me answer your question with some examples: nanobodies and small antibody fragments can be the basis for sensors in plant biology. Nanotubes, made out of single-walled carbon, are being used as a novel way to transform plants, bypassing the traditional agrobacterium based transformation.

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Really looking forward for an insightful disussion and seminar?

How nanobody combinations will help in cancer immunotherapy?

edit 0 Answer 19 Views Oct 12, 2022

how well PCR technique confirms the positivity of covid-19?

how well PCR technique confirms the positivity of covid-19?

edit 0 Answer 13 Views Oct 12, 2022

which is the most potent technique for the diagnosis of Sars-Cov2?

till date which techniques used in the diagnosis of Sars-Cov2

edit 0 Answer 7 Views Oct 16, 2022

I am working on marine filamentous cyanobacteria to identify bioactive components. Will your experiment technique help me to find bioactive compoents?

I am woking on a marine filamentous cyanobacteria and standardized the culture techniques for the same. Now I am testing the biomass for active components. It is a red filamentous cyanobacteria with lot of pigments in it. If any one suggest any simple technique to find active components with that of nanoscale, it will be of great use.


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edit 0 Answer 7 Views Oct 12, 2022

Which type of Nano particles are used against SARS COv-2 ?

Biodegradable or Metallic nanoparticles.

edit 0 Answer 6 Views Oct 12, 2022

What the application scenario of DNA origami for SERS based detection?

As we understood that DNA origami can be designed to prepare more reproducible SERS substrates and readouts. Why has this field not being popular among SERS scientists? What are the application scenario and how can young researchers can explore this field?

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edit 0 Answer 3 Views Oct 13, 2022