Below I attach the details of the NMR measurements of phase separating samples as described in the manuscript. These are standard experiments available on all commercial NMR spectrometers (in this case Bruker Avance III) and are very straightforward to set-up. I attach the exact pulse programs that we used that you can apply directly. Please let us know (martin.blackledge@ibs.fr) if any other parts of the protocol are not clear.
NMR measurements of phase separating samples
15N labelled P50N525 and P304-507 were premixed at different ratios and diluted in buffer so that final NaCl concentration was 150 mM and then loaded in 3 mm NMR tube. 1H-15N HSQCs and R1r experiments were measured as described for non-phase separating samples. Pulsed field gradient NMR diffusion experiments were measured using 15N-edited stimulated-echo (STE) diffusion experiments using a 300 ms diffusion delay at 16 to 20 gradient strengths ranging linearly from 0 to 0.55 T m-1 (47). 1H-15N HSQCs used for the development of the kinetic model were measured using both P50N525 and P304-50715N labeled samples at constant P304-507 concentration of 75 µM and P50N525 5%, 10%, 20% 50% 100%. The concentration of P50N525 and P304-507 in the dilute phase was estimated on the basis of intensities of 23 for P50N525 and 9 for P304-507 non-overlapping and non-interactingpeaks which were summed and normalised by the intensities of the peaks in the spectra of the individual proteins.
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How to cite:
Readers should cite both the Bio-protocol preprint and the original research article where this protocol was used:
Ruigrok, R and Blackledge, M(2021). NMR measurements of phase-separating samples. Bio-protocol Preprint. bio-protocol.org/prep990.
Guseva, S., Milles, S., Jensen, M. R., Salvi, N., Kleman, J., Maurin, D., Ruigrok, R. W. H. and Blackledge, M.(2020). Measles virus nucleo- and phosphoproteins form liquid-like phase-separated compartments that promote nucleocapsid assembly. Science Advances 6(14). DOI: 10.1126/sciadv.aaz7095
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