Improve Research Reproducibility A Bio-protocol resource
bpdetail_icon_lock
Preprint

Calculation of dice scores

YH Yunyun Han
PF Peng Fei

Last updated date: Apr 1, 2021 Views: 827 Forks: 0

original An abbreviated version of this protocol was published in eLife in Jan, 2021
Bi-channel image registration and deep-learning segmentation (BIRDS) for efficient, versatile 3D mapping of mouse brain
download pdf Download PDF
ask Ask a question
cite How to cite
nfavorite Favorite

Dear Shawn Wu:
The dice scores is defined as:

 

 

 

where I and J represents brain regions before and after registration, and |·| returns pixel number of the region.

The dice scores was also used in:

Ni, H., et al., A Robust Image Registration Interface for Large Volume Brain Atlas. Scientific Reports, 2020. 10(1).

Best wishes,

Zhaofei Wang

Copyright: Content may be subjected to copyright.
How to cite：
Readers should cite both the Bio-protocol preprint and the original research article where this protocol was used:
  1. Han, Y and Fei, P(2021). Calculation of dice scores. Bio-protocol Preprint. bio-protocol.org/prep989.
  2. Wang, X., Zeng, W., Yang, X., Zhang, Y., Fang, C., Zeng, S., Han, Y. and Fei, P.(2021). Bi-channel image registration and deep-learning segmentation (BIRDS) for efficient, versatile 3D mapping of mouse brain. eLife. DOI: 10.7554/eLife.63455

Do you have any questions about this protocol?

Post your question to gather feedback from the community. We will also invite the authors of this article to respond.

0/150

tip Tips for asking effective questions

+ Description

Write a detailed description. Include all information that will help others answer your question including experimental processes, conditions, and relevant images.

post Post a Question
0 Q&A
This protocol preprint was submitted via the "Request a Protocol" track.