There are two uploaded files. sample_correlation_matrix.pdf is a description of the R commands needed to reproduce the sample correlation matrix heatmap plot (Fig. 1B) in the paper.
sample_correlation_matrix.txt is an Rmarkdown file with the same contents, but this can be opened in RStudio and the code run directly from the document. I had to make the extension of the file .txt rather than .Rmd because I couldn't upload it otherwise. You'll need to change the extension back to .Rmd once you've downloaded it to use it in Rstudio.
Related files
sample_correlation_matrix.pdf
sample_correlation_matrix.txt
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How to cite:
Readers should cite both the Bio-protocol preprint and the original research article where this protocol was used:
White, R. J., Collins, J. E., Sealy, I. M., Wali, N., Dooley, C. M., Digby, Z., Stemple, D. L., Murphy, D. N., Billis, K., Hourlier, T., Füllgrabe, A., Davis, M. P., Enright, A. J. and Busch-Nentwich, E. M.(2017). A high-resolution mRNA expression time course of embryonic development in zebrafish. eLife. DOI: 10.7554/eLife.30860
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