Co-expression analysis

Protocol for co-expression analysis in Figure S1 of Research Article,

“Controlled hydroxylations of diterpenoids allow for plant chemical defense without autotoxicity”

DOI: 10.1126/science.abe4713

Figure S1A.

The correlation between known genes was developed using package “ggplot2”, with the script attached as “Fig. S1A_heatmap_ggplot2.R”

Figure S1B. 

The heatmap in B panel was developed using the original script of “heamap.2” in package “gplots”, attached as “Fig. 

S1B_heatmap_gplots.R”.

Figure S1C.

The dendrogram was produced using the modified R package “WGCNA”. The script was attached with name as “Fig. S1C_Module detection_WGCNA.R”.

The heatmap in Figure S1C was produced using the exact same script with “Fig. S1B_heatmap_gplots.R”.

note that since .R files are not an allowable format for this site, all three .R files have been converted to .txt files

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