Cells were plated in standard growth medium to achieve approximate 80% confluency.
Wash the cells with ice-cold PBS twice and collect cells with RIPA lysis buffer. Immediately scrape the cells off the plate and transfer the extract to a microcentrifuge tube.
Sonicate the sample on ice (Uibra Cell, SONICS ); 3 cycle; Intensity, 45%; Time, ON: 15 sec, OFF: 15 sec), and centrifuge it at 13,000 rpm for 10 min at 4 °C.
Transfer supernatant to a clean microcentrifuge tube. Measure the protein concentration using the BCA Protein Assay Kit (Pierce TM).
Add 5×Loading Buffer to the supernatant. Heat the sample to 99 °C for 10 min.
Load 10-20 μg sample onto SDS-PAGE gel and load 5 μl Prestained Protein Marker (Thermo, 26616) to determine molecular weights.
Electrophoresis at constant75 Volts (about 30 minutes) usingrunning buffer until the protein dye reaches the separation gel and change to 120 Volts until the protein dye reaches the bottom of the gel.
Electrotransfer to PVDF membrane using transfer buffer (constant 80 Volts 1 h on ice).
Incubate membrane in 30 ml of blocking buffer (5% skim milk with TBST) for 2-3 h at RT. Wash three times for 5 min each with 20 ml of TBST.
Incubate membrane and primary antibodyin 10 ml primary antibodydilution buffer (TBST) with gentle agitation overnight at 4 °C. Wash three times for 10 min each with 20 ml of TBST.
Incubate membrane with HRP-conjugated goat anti-rabbit/mouse secondary antibody (1:5000-1:10000) in 10 ml of TBST with gentle agitation for 2 h at RT. Wash three times for 10 min each with 20 ml of TBST.
Incubate membrane with 4 ml BeyoECL Plus mix substrate (Beyotime, P0018) with gentle agitation for 2 min at RT.
Wrap the membrane in plastic wrap and expose to x-ray film. An initial 5-10 sec exposure should indicate the proper exposure time.
Scan the membrane. Calculate protein amount using Image J program. Note: Tanon Chemiluminescence gel imaging system was also used to obtain Real-time observation of chemiluminescence images.
Materials and Reagents
Materials and Reagents
Company
Catalogue
RIPA lysis buffer
Solarbio
R0010
Protease Inhibitor Cocktail, PIC
Roche
04693132001
BCA Protein Assay Kit (Pierce TM)
Thermo
23227
Prestained Protein Marker
Thermo
26616
BeyoECL Plus
Beyotime
P0018
0.45 μm PVDF membrane
Merck Millipore
IPVH00010
0.22 μm PVDF membrane
Merck Millipore
ISEQ00010
Antibodies
Company
Catalogue
Anti-HLA-A
Abcam
ab52922
Anti-HLA Class I Heavy Chain (HC10)
Nordic MUbio
MUB2037P
Anti-HLA-B
Abcam
ab197166
Anti-MHC Class I H2Kb
Abcam
ab93364
Anti-OVA
Immunoway
YM0492
Anti-Calnexin
Proteintech
10427-2-AP
Anti-SND1
Proteintech
60265-1-Ig
Anti-SND1
Abcam
Ab65078
Anti-beta-2-microglobulin
Proteintech
13511-1-AP
Anti-SEC61A for IF
Proteintech
24935-1-AP
Anti-SEC61A for WB
Abcam
ab183046
Anti-RRBP1
Proteintech
22015-1-AP
Anti-VCP
Proteintech
10736-1-AP
Anti-VIMP(SELS)
Proteintech
15591-1-AP
Anti-HRD1(SYVN1)
Abcam
ab170901
Anti-UGGT
Abcam
ab124879
Anti-GFP
Proteintech
66002-1-Ig
Anti-FLAG
Sigma
A2220
Anti-β-actin
Sigma
A5441
Anti-Ubquitin
CST
3933
Anti-Mouse IgG (H+L) Antibody
KPL
074-1806
Anti-Rabbit IgG (H+L) Antibody
KPL
074-1506
Solutions:
1. 10×PBS (Phosphate buffer saline)
NaCl
40
g
KCl
1
g
Na2HPO4.12H2O
17.8
g
KH2PO4
1.35
g
milliQ
500
mL
milliQ
500
mL
Adjust pH to 7.4 by adding 5M NaOH.
2. 10× TBS (Tris buffered saline)
NaCl
40
g
KCl
1
g
Tris-base
15
g
milliQ
500
mL
Adjust pH to 7.4 by adding hydrochloric acid.
3. 1×TBST
10×TBS
50
mL
Tween-20
500
μL
milliQ
450
mL
4. 5×Running buffer
Glycine
94
g
Tris-base
15.1
g
SDS
8
g
milliQ
1
L
5. 5×Loading Buffer
bromophenol blue
0.05
g
SDS
10
g
1 M Tris-Cl(pH=6.8)
25
mL
glycerin
50
mL
milliQ
20
ml
β-mercaptoethanol (BME)
5
ml
6. 10×Trans Buffer
Tris-base
180.2
g
Glycine
37.28
g
milliQ
1
L
Copyright: Content may be subjected to copyright.
How to cite:
Readers should cite both the Bio-protocol preprint and the original research article where this protocol was used:
Wang, Y., Wang, X., Cui, X., Zhuo, Y., Li, H., Ha, C., Xin, L., Ren, Y., Zhang, W., Sun, X., Ge, L., Liu, X., He, J., Zhang, T., Zhang, K., Yao, Z., Yang, X. and Yang, J.(2020). Oncoprotein SND1 hijacks nascent MHC-I heavy chain to ER-associated degradation leading to impaired CD8+ T cell response in tumor . Science Advances 6(22). DOI: 10.1126/sciadv.aba5412
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