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Connectomic Analysis of Tissues

SR Sam Brickman Raredon

Last updated date: Aug 3, 2020 Views: 930 Forks: 0

original An abbreviated version of this protocol was published in Science Advances in Dec, 2019
Single-cell connectomic analysis of adult mammalian lungs
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Protocol for Connectomic Analysis of Tissues

 

To facilitate replication of this work, we have compiled and updated all codes used to generate figures in this manuscript into a single software package, publicly available at https://github.com/msraredon/Connectome

 

Functional vignettes showing how to use the software, adaptable to other tissue datasets, are available at https://msraredon.github.io/Connectome/

 

Please cite:

 

Raredon, M.S.B., Adams, T.S., Suhail, Y., Schupp, J.C., Poli, S., Neumark, N., Leiby, K.L., Greaney, A.M., Yuan, Y., Horien, C., et al. (2019). Single-cell connectomic analysis of adult mammalian lungs. Science Advances 5, eaaw3851. 

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How to cite：
Readers should cite both the Bio-protocol preprint and the original research article where this protocol was used:
  1. Raredon, S B(2020). Connectomic Analysis of Tissues. Bio-protocol Preprint. bio-protocol.org/prep430.
  2. Raredon, M. S. B., Adams, T. S., Suhail, Y., Schupp, J. C., Poli, S., Neumark, N., Leiby, K. L., Greaney, A. M., Yuan, Y., Horien, C., Linderman, G., Engler, A. J., Boffa, D. J., Kluger, Y., Rosas, I. O., Levchenko, A., Kaminski, N., Niklason, L. E. and Engler, A. J.(2019). Single-cell connectomic analysis of adult mammalian lungs . Science Advances 5(12). DOI: 10.1126/sciadv.aaw3851

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