This protocol is provided by the author(s) of the original paper via Bio-protocol's "Request a Protocol" feature.
Original Research Paper Predicting evolution from the shape of genealogical trees
DOI: 10.7554/eLife.03568
eLIFE , Nov 11, 2014
Related protocols in the same article
Implementation of the inference algorithm
Last updated date: Jul 1, 2020 View: 160
Download PDF How to cite Copy protocol link Q&A

Thank you for your interest in our paper. With more recent versions of fasttree, modification of the code should no longer be necessary. Instead, you can compile it with a flag indicating double precision:

Regarding the outgroup, you could use a strain from the early 1990ies like this one:


How to cite: Readers should cite both the Bio-protocol article and the original research article where this protocol was used:
1. Neher, R. and Shraiman, B. (2020). Implementation of the inference algorithm. Bio-protocol.
2. Neher, R., Russell, C. and Shraiman, B.(2014). Predicting evolution from the shape of genealogical trees. eLIFE . DOI: 10.7554/eLife.03568
Copyright: Content may be subjected to copyright.
We use cookies on this site to enhance your user experience. By using our website, you are agreeing to allow the storage of cookies on your computer.