For the transposon genotyping PCRs, I used NEB Q5 polymerase, following the manufacturer's recommended protocol for PCRs from genomic DNA. I used 20 sec. extension time at 72 °C, 35 cycles, with the following primers and conditions:
Readers should cite both the Bio-protocol preprint and the original research article where this protocol was used:
Pierson Smela, M and Church, G(2023). TF transposon genotyping PCRs for granulosa differentiation. Bio-protocol Preprint. bio-protocol.org/prep2407.
Pierson Smela, M. D., Kramme, C. C., Fortuna, P. R., Adams, J. L., Su, R., Dong, E., Kobayashi, M., Brixi, G., Kavirayuni, V. S., Tysinger, E., Kohman, R. E., Shioda, T., Chatterjee, P. and Church, G. M.(2023). Directed differentiation of human iPSCs to functional ovarian granulosa-like cells via transcription factor overexpression. eLife. DOI: 10.7554/eLife.83291
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