Pulse cells by diluting stock 10mM EdU (1,000X, so 1 uL EdU per 1 mL media) in media at 37°C (incubator) for an appropriate amount of time.
Wash cells 1x with PBS (each wash is 3 min)
Fix with 4% PFA for 10 min
Wash cells 2x with PBS
Permeabilize cells with 0.3% TritonX-100 in PBS for 10 min
Wash cells 2x with PBS
During permeabilization, freshly prepare 200 mg/mL of Ascorbic Acid by dissolving in PBS (to 1 mL of PBS at 0.2 g of Ascorbic Acid)
Freshly prepare EdU Staining Mix: for a 6-well plate add 500 uL to each well, so prepare master mix accordingly
9. Incubate in dark at room temperature for 30 min (hereon, always cover cells with aluminum foil)
10. Wash cells 2x with PBS
11. Here, proceed with blocking with 5% GS for 1 hr and addition of primary antibody for O/N incubation followed by washes and secondary antibody incubation. OR
12. Stain with DAPI (dilute 5 mg/mL DAPI 10,000X in PBS) for 5 min at room temperature
13. Wash cells 2x with PBS
14. Image or store at 4°C covered with aluminum foil
Readers should cite both the Bio-protocol preprint and the original research article where this protocol was used:
Shah, A, Olson, E and Liu, N(2023). EdU labeling assay. Bio-protocol Preprint. bio-protocol.org/prep2315.
Shah, A. M., Guo, L., Morales, M. G., Jaichander, P., Chen, K., Huang, H., Cano Hernandez, K., Xu, L., Bassel-Duby, R., Olson, E. N. and Liu, N.(2023). TWIST2-mediated chromatin remodeling promotes fusion-negative rhabdomyosarcoma. Science Advances 9(17). DOI: 10.1126/sciadv.ade8184
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