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Test on generated test data

SF Sebastian Fürthauer
SR Stefanie Redemann

Last updated date: Aug 4, 2022 Views: 579 Forks: 0

original An abbreviated version of this protocol was published in eLife in Jun, 2021
Microtubule reorganization during female meiosis in C. elegans
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The github repository which contains the Code associated to this paper. (see https://github.com/SebastianFuerthauer/SpindleRerrangement ). This now contains a python file named create_artificial_data.py which we used for generating test cases.

The code allows you to pick a timestep DT. Each timestep consists of the following sequence:

1/ catastrophing MTs are determined and destroyed.
2/ on surviving MTs cutting events are performed.
3/ New MTs are nucleated.
4/ All surving MTs grow.

 

Test data is generated by running the Code for a total time that is long compared to catastrophe and cutting times, such that a steady state is reached.


For analysis we use the same scripts as for actual data, which are available from the same github repository.

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How to cite：
Readers should cite both the Bio-protocol preprint and the original research article where this protocol was used:
  1. Fürthauer, S and Redemann, S(2022). Test on generated test data. Bio-protocol Preprint. bio-protocol.org/prep1843.
  2. Lantzsch, I., Yu, C., Chen, Y., Zimyanin, V., Yazdkhasti, H., Lindow, N., Szentgyoergyi, E., Pani, A. M., Prohaska, S., Srayko, M., Fürthauer, S. and Redemann, S.(2021). Microtubule reorganization during female meiosis in C. elegans. eLife. DOI: 10.7554/eLife.58903

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