Improve Research Reproducibility A Bio-protocol resource
bpdetail_icon_lock
Preprint

Genome-wide association studies

EK Ella Katz
DK Daniel J Kliebenstein

Last updated date: Feb 23, 2022 Views: 701 Forks: 0

original An abbreviated version of this protocol was published in eLife in May, 2021
Genetic variation, environment and demography intersect to shape Arabidopsis defense metabolite variation across Europe
download pdf Download PDF
ask Ask a question
cite How to cite
nfavorite Favorite

As all the GWAS are with Arabidopsis accessions we did the GWAS using the 1001 genomes tool (easyGWAS https://easygwas.ethz.ch/).

We used the EMMAX algorithm, MAF=0.05.

We used the amounts of each glucosinolate as a trait for each GWAS.

 

Please let us know if there is anything else we can help with.

Copyright: Content may be subjected to copyright.
How to cite：
Readers should cite both the Bio-protocol preprint and the original research article where this protocol was used:
  1. Katz, E and Kliebenstein, D(2022). Genome-wide association studies. Bio-protocol Preprint. bio-protocol.org/prep1546.
  2. Katz, E., Li, J., Jaegle, B., Ashkenazy, H., Abrahams, S. R., Bagaza, C., Holden, S., Pires, C. J., Angelovici, R. and Kliebenstein, D. J.(2021). Genetic variation, environment and demography intersect to shape Arabidopsis defense metabolite variation across Europe. eLife. DOI: 10.7554/eLife.67784

Do you have any questions about this protocol?

Post your question to gather feedback from the community. We will also invite the authors of this article to respond.

post Post a Question
0 Q&A
This protocol preprint was submitted via the "Request a Protocol" track.