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Preprint

The QBRC neoantigen calling pipeline

TW Tao Wang

Last updated date: Nov 29, 2021 Views: 753 Forks: 0

original An abbreviated version of this protocol was published in Science Immunology
Tumor neoantigenicity assessment with CSiN score incorporates clonality and immunogenicity to predict immunotherapy outcomes
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Hello!

 

Thanks for your interest! Please refer to:

 

https://github.com/tianshilu/QBRC-Somatic-Pipeline

https://github.com/tianshilu/QBRC-Neoantigen-Pipeline

 

And let me know if you have any question. You can reach me via tao.wang@utsw.edu

 

Thanks!
 

Tao

 

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How to cite：
Readers should cite both the Bio-protocol preprint and the original research article where this protocol was used:
  1. Wang, T(2021). The QBRC neoantigen calling pipeline. Bio-protocol Preprint. bio-protocol.org/prep1455.
  2. Lu, T., Wang, S., Xu, L., Zhou, Q., Singla, N., Gao, J., Manna, S., Pop, L., Xie, Z., Chen, M., Luke, J. J., Brugarolas, J., Hannan, R. and Wang, T.(2020). Tumor neoantigenicity assessment with CSiN score incorporates clonality and immunogenicity to predict immunotherapy outcomes . Science Immunology 5(44). DOI: 10.1126/sciimmunol.aaz3199

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