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Phages and genomes

DR Daniel A Russell
GH Graham F Hatfull

Last updated date: May 13, 2021 Views: 918 Forks: 0

original An abbreviated version of this protocol was published in eLife in Apr, 2015
Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity
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There are huge numbers of scientific papers out there on phages and phage genomes. These ones are good general reviews of what we know about Mycobacteriophages.

https://pubmed.ncbi.nlm.nih.gov/22420855/

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6282025/

For genomics, this is a summary of how we sequence and finalize genomes.

https://pubmed.ncbi.nlm.nih.gov/29134591/

And for annotation, this is a chapter that describes our annotation process.

https://pubmed.ncbi.nlm.nih.gov/29134598/

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How to cite：
Readers should cite both the Bio-protocol preprint and the original research article where this protocol was used:
  1. Russell, D and Hatfull, G(2021). Phages and genomes. Bio-protocol Preprint. bio-protocol.org/prep1085.
  2. Pope, W. H., Bowman, C. A., Russell, D. A., Jacobs-Sera, D., Asai, D. J., Cresawn, S. G., Jacobs, W. R., Hendrix, R. W., Lawrence, J. G. and Hatfull, G. F.(2015). Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity. eLife. DOI: 10.7554/eLife.06416

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