Readers should cite both the Bio-protocol preprint and the original research article where this protocol was used:

Trostle, A, Lavery, L, Wan, Y and Zoghbi, H(2021). Integrative RNA-seq and methylation analysis. Bio-protocol Preprint. bio-protocol.org/prep1053.
Lavery, L. A., Ure, K., Wan, Y., Luo, C., Trostle, A. J., Wang, W., Jin, H., Lopez, J., Lucero, J., Durham, M. A., Castanon, R., Nery, J. R., Liu, Z., Goodell, M., Ecker, J. R., Behrens, M. M. and Zoghbi, H. Y.(2020). Losing Dnmt3a dependent methylation in inhibitory neurons impairs neural function by a mechanism impacting Rett syndrome. eLIFE. DOI: 10.7554/eLife.52981