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Useful online tools for molecular biology/biochemistry

Author: Gal Haimovich, updated date: , view: 8, Q&A: 0

Procedure

Stellaris RNA smFISH probe designer: https://www.biosearchtech.com/support/tools/design-software/stellaris-probe-designer (free, requires login)

UCSC in silico PCR: http://genome.ucsc.edu/cgi-bin/hgPcr

Gene Cards - human genes: https://www.genecards.org/

Reverse complement: https://www.bioinformatics.org/sms/rev_comp.html

RNAxs - design siRNA / Cas13a sgRNA: http://rna.tbi.univie.ac.at/cgi-bin/RNAxs/RNAxs.cgi?hakim=1

The CRISPR page: http://wwwuser.cnb.csic.es/~montoliu/CRISPR/

CRISPRa/i sgRNA design: https://portals.broadinstitute.org/gpp/public/analysis-tools/sgrna-design-crisprai

DINAMELT - hybridization of two differntstrands: http://unafold.rna.albany.edu//?q=DINAMelt/Hybrid2

mfold - DNA: http://unafold.rna.albany.edu/?q=mfold/DNA-Folding-Form

mfold - RNA: http://unafold.rna.albany.edu/?q=mfold/RNA-Folding-Form

pepdraw - draw peptides: http://www.tulane.edu/~biochem/WW/PepDraw/

Expasy - a repository of many online tools for proteomics, molec biology etc...: https://www.expasy.org/

NetPhos 3.1 - predict phosphorylation sites: http://www.cbs.dtu.dk/services/NetPhos/

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