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Hello, Thank you for the script and the protocol. I tried the...
Hello,
Thank you for the script and the protocol. I tried the script with my own data and it worked out well. I had to remove lines 53 and 54 though. I tried to figure out how I could change the script in order to get (1, 2, 3, 4, 5 and 6) on the x-axis instead of (1, 2, 4 and 6). I Read more
Thank you for the script and the protocol. I tried the script with my own data and it worked out well. I had to remove lines 53 and 54 though. I tried to figure out how I could change the script in order to get (1, 2, 3, 4, 5 and 6) on the x-axis instead of (1, 2, 4 and 6). I Read more
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Titouan Bonnot Author Answered Nov 19, 2021
INRAE - Dijon, Agroecology
Hello Alice S.,
I’m glad to hear that our protocol worked well with your own data.
You can try to add the following code at the end of l.40 of the R script :
scale_y_continuous(breaks = seq(from = 0 , to = 6, by = 1))+
so l.40 of the script will look like :
scale_x_discrete(limits= GO_all$GO_biological_process)+scale_y_continuous(breaks = seq(from = 0 , to = 6, by = 1))+
Please note that the axes are flipped with our script, the x-axis corresponds to the GO terms and the y-axis corresponds to the fold enrichment.
I hope that helps!
Titouan
I’m glad to hear that our protocol worked well with your own data.
You can try to add the following code at the end of l.40 of the R script :
scale_y_continuous(breaks = seq(from = 0 , to = 6, by = 1))+
so l.40 of the script will look like :
scale_x_discrete(limits= GO_all$GO_biological_process)+scale_y_continuous(breaks = seq(from = 0 , to = 6, by = 1))+
Please note that the axes are flipped with our script, the x-axis corresponds to the GO terms and the y-axis corresponds to the fold enrichment.
I hope that helps!
Titouan
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