I have also seen 330 Daltons in other company's catalogs. "325" was cited from New England Biolabs catalog book. If you want to have a rough estimation of the MW of a DNA nucleotide, 330 or 325 might not matter that much.
But, If you know the number of As Cs Gs and Ts (or the number of GC and AT pairs), you can do a more accurate determination of MW of DNA (or dsDNA) based on the molecular weight of each monophosporylated nucleotides. I should also mention that the numbers provided in the current protocol are the molecular weight of each nucleotides given that they loose a water molecule of 18.0 when polymerized.
Hope this helps.
--Fanglian