If scale up DSP possible?

Jiang Zhu
Jiang Zhu
Sep 14, 2024
protocol Protocol: FixNCut: A Practical Guide to Sample Preservation by Reversible Fixation for Single Cell Assays

Dear Dr Wang and Authors on this protocol,


We are interesting in this protocol for our scRNA seq experiment. We need a dozen millions of cells to be processed at the same time. In th img Read more Read less more less

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Laura Jiménez-Gracia Author Answered Sep 17, 2024

Centro Nacional de Analisis Genomico (CNAG), Spain

Hi,


The prep of DSP can’t be scaled without risking precipitation and suboptimal final concentration of DSP in the working solution.


We recommend to make 500 uL and pool aliquots.


Luciano

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Jiang Zhu Answered Oct 2, 2024

thanks for the reply, those are very helpful suggestion. We are doing some perturbation at large scale, so a higher volume is needed. I did test scale up in house, we found that if do it within 10 minutes and vigous vortexing, we can scale up to 10mL final solution without loss of efficiency.

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Shuoshuo Wang Author Answered Sep 16, 2024

Spatial Technologies, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, USA

Dear Jiang,


as we explained in this guide, DSP has very low solubility in PBS or most aqueous solutions, so that simply scaling up will form precipitation and therefore perturb the fixation efficiency. Depending on the exact amount of input, you may consider running test on your cells first. It is also possible to fix cells suspension in 500uL and replenish with additional aliquots for higher cell input, rather than generate a larger scale at once.


Could you provide some background information and please explain why you need multiple million cells? Regular single cell methods can't analyze that many cells at once.


Thank you! Let me know if that answered your question.

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