Why is my RT-PCR amplification curve is jagged and the ct value is large?

Scott Chatterjee
Scott Chatterjee
Oct 9, 2022

Recently, the amplification curve of my RT-PCR was jagged, and the curves of all samples did not start from the starting point, the whole curve was discontinuous and the Ct value was large, what is going on?

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Mengyuan Singh Answered Oct 10, 2022

The University of Western Australia

 1. Discontinuities in the amplification curve are caused by low RNA purity or low gene expression. It can be recommended to increase the gradient of the template dilution multiple to see the optimization effect or re-prepare high-purity RNA to re-experiment  

2. It may be that the instrument was used for a long time, and the baseline needs to be adjusted. 

3. The entire reaction conditions of RT-PCR are not suitable or the primer design is improper, resulting in low amplification efficiency, it is recommended to confirm the amplification efficiency by standard curves.  


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