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Implementation of the inference algorithm

RN Richard A Neher
BS Boris I Shraiman

Published: Jul 1, 2020 Views: 1082

Original research article

The authors used this protocol in:

https://doi.org/10.7554/eLife.03568

Nov 11, 2014

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Thank you for your interest in our paper. With more recent versions of fasttree, modification of the code should no longer be necessary. Instead, you can compile it with a flag indicating double precision:


http://www.microbesonline.org/fasttree/#BranchLen


Regarding the outgroup, you could use a strain from the early 1990ies like this one:


https://www.fludb.org/brc/fluStrainDetails.spg?strainName=A/Beijing/32/1992(H3N2)&decorator=influenza


 

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