Improve Research Reproducibility A Bio-protocol resource
bpdetail_icon_lock
Preprint

Useful online tools for molecular biology/biochemistry

GH Gal Haimovich

Last updated date: Mar 31, 2024 Views: 817

download pdf Download PDF
ask Ask a question
nfavorite Favorite
Procedure

Stellaris RNA smFISH probe designer: https://www.biosearchtech.com/support/tools/design-software/stellaris-probe-designer  (free, requires login)


UCSC in silico PCR: http://genome.ucsc.edu/cgi-bin/hgPcr


Gene Cards - human genes: https://www.genecards.org/ 


Reverse complement: https://www.bioinformatics.org/sms/rev_comp.html


RNAxs - design siRNA / Cas13a sgRNA: http://rna.tbi.univie.ac.at/cgi-bin/RNAxs/RNAxs.cgi?hakim=1


The CRISPR page: http://wwwuser.cnb.csic.es/~montoliu/CRISPR/


CRISPRa/i sgRNA design: https://portals.broadinstitute.org/gpp/public/analysis-tools/sgrna-design-crisprai


DINAMELT - hybridization of two differntstrands: http://unafold.rna.albany.edu//?q=DINAMelt/Hybrid2


mfold - DNA: http://unafold.rna.albany.edu/?q=mfold/DNA-Folding-Form

mfold - RNA: http://unafold.rna.albany.edu/?q=mfold/RNA-Folding-Form


pepdraw - draw peptides: http://www.tulane.edu/~biochem/WW/PepDraw/


Expasy - a repository of many online tools for proteomics, molec biology etc...: https://www.expasy.org/


NetPhos 3.1 - predict phosphorylation sites: http://www.cbs.dtu.dk/services/NetPhos/






Recipes

Do you have any questions about this protocol?

Post your question to gather feedback from the community. We will also invite the authors of this article to respond.

0/150

tip Tips for asking effective questions

+ Description

Write a detailed description. Include all information that will help others answer your question including experimental processes, conditions, and relevant images.

post Post a Question
0 Q&A
This protocol preprint was submitted via the Bio-protocol Exchange "Submit a Preprint" track.