Improve Research Reproducibility A Bio-protocol resource
- Home
- Protocols
-
Concise Method
Analysis of Tandem Duplication Event
Request a Protocol
Ask a
question
Favorite
Following the identification of tandemly duplicated genes in PTGBase, all-against-all BLAST of protein sequences in 13 cotton species was employed to identify the paralogous gene pairs within single cotton species with E-value cut-off ≤1e-20 (Yu et al., 2015). After confirmation of paralogous gene pairs with high similarity anchored on closer location of identical genomic regions, tandemly duplicated genes were obtained in different cotton species, and one unrelated gene was allowed within one tandem array.
Copyright and License information: ©2021 Liang, Wang, Zheng, Gong, Li, Ai, Li and Chen.
This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
Do you have any questions about this protocol?
Post your question to gather feedback from the community. We will also invite the authors of this article to respond.
Post a Question0 Q&A
