Metabolite extraction for mass spectrometry

MK Marisa K. Kilgour
SM Sarah MacPherson
LZ Lauren G. Zacharias
AE Abigail E. Ellis
RS Ryan D. Sheldon
EL Elaine Y. Liu
SK Sarah Keyes
BP Brenna Pauly
GC Gillian Carleton
BA Bertrand Allard
JS Julian Smazynski
KW Kelsey S. Williams
PW Peter H. Watson
JS John Stagg
RD Ralph J. DeBerardinis
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To prepare samples for metabolite profiling, cells were washed once with ice-cold saline solution and 1 ml of 80% methanol added to each sample before vortexing and snap freezing in liquid nitrogen. Samples were subjected to three freeze-thaw cycles and centrifuged at 14,000 rpm for 15 min at 4°C. The metabolite-containing supernatant was evaporated until dry. Metabolites were reconstituted in 50 μl of 0.03% formic acid, vortex-mixed, and centrifuged to remove debris.

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