2.3. Retrotranscription and Quantitative Real-Time Reverse Transcription Polymerase Chain Reaction (qRT-PCR)

AA Anna Adam-Artigues
IG Iris Garrido-Cano
JC Juan Antonio Carbonell-Asins
AL Ana Lameirinhas
SS Soraya Simón
BO Belén Ortega-Morillo
MM María Teresa Martínez
CH Cristina Hernando
VC Vera Constâncio
OB Octavio Burgues
BB Begoña Bermejo
RH Rui Henrique
AL Ana Lluch
CJ Carmen Jerónimo
PE Pilar Eroles
JC Juan Miguel Cejalvo
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A volume of 9.16 µL of RNA from plasma was retrotranscribed into cDNA using the High-Capacity cDNA Reverse Transcription kit (Thermo Fisher Scientific, Waltham, MA, USA), according to the manufacturer’s protocol. The reaction mixture was incubated at 16 °C for 30 min, at 42 °C for 30 min, and at 85 °C for 5 min in a thermal cycler. To determine miRNA expression levels, qRT-PCR was performed. A total of 2 µL of cDNA was amplified with 5 µL of Xpert Fast Probe 2× MasterMix (GRiSP, Portugal), 0.5 µL of Taqman microRNA assays (Assay ID 000602 and ID 000435 for miR-30b-5p and miR-99a-5p, respectively, Thermo Fisher Scientific, Waltham, MA, USA) and 2.5 µL of nuclease-free water. qRT-PCR reaction was carried out on a QuantStudio 5 Real-Time PCR System (Thermo Fisher Scientific, Waltham, MA, USA) under the following conditions: 98 °C for 3 min, 45 cycles of 95 °C for 10 s, 60 °C for 30 s, and 37 °C for 30 s. RNU38B (assay ID 001004 Thermo Fisher Scientific, Waltham, MA, USA) was employed to normalize the expression of miRNAs. A standard curve of four serial 10-fold dilutions of cDNA was run in each plate and used to calculate the expression of miRNAs. All samples were analyzed in triplicate.

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