2.1. Establishment and Verification of Gene Prognostic Model

AW Anna Wang
HG Hongyan Guo
ZL Zaiqiu Long
request Request a Protocol
ask Ask a question
Favorite

We carried out the LASSO Cox regression model (R package “glmnet”) to select the candidate genes and subsequently established the prognostic model [14, 15]. We ultimately retained 17 genes and their coefficients and utilized the minimum criteria to determine the penalty parameter (λ). We calculated the risk score after centralizing and standardizing (applying the “scale” function in R) the TCGA expression data. The risk score formula was shown as follows: risk score = ∑7iXi × Yi (X: coefficients, Y: gene expression level).

Do you have any questions about this protocol?

Post your question to gather feedback from the community. We will also invite the authors of this article to respond.

0/150

tip Tips for asking effective questions

+ Description

Write a detailed description. Include all information that will help others answer your question including experimental processes, conditions, and relevant images.

post Post a Question
0 Q&A