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Tajima’s D

JS James Sweet-Jones
VL Vasileios Panagiotis Lenis
AY Andrey A. Yurchenko
NY Nikolay S. Yudin
MS Martin Swain
DL Denis M. Larkin
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Tajima’s D for mutation index was calculated over the same intervals of 25 SNPs, whose lengths were calculated from the output of the H2/H1 and H12 statistics. Using the vcftools V.0.1.13 (Danecek et al., 2011), Tajima’s D was calculated [–TajimaD 900000000] for each chromosome per group/breed file per window. Output files were concatenated per group.

Copyright and License information:  ©2021 Sweet-Jones, Lenis, Yurchenko, Yudin, Swain and Larkin.
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