Silhouette score to quantify batch-effect correction and clustering performance

DC Dandan Cao
RC Rachel W. S. Chan
EN Ernest H. Y. Ng
KG Kristina Gemzell-Danielsson
WY William S. B. Yeung
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The silhouette score of each cell was calculated based on secretory or menstrual ePCs, or different clusters of ePCs with the function “silhouette” from the R package cluster (version 2.1.0). Both the mean and distribution of silhouette scores were used for selection of the batch-correction methods and clustering resolution.

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